当前解析结果
SmilChr01G000163| 统一新 Gene ID | SmilChr01G000163 |
|---|---|
| 名称 | SmilChr01G000163 |
| 描述 | exocyst complex component SEC15B |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 2703580 - 2706414 / - |
| NCBI Gene ID | LOC131007277 |
|---|---|
| GeneID | 131007277 |
| locus_tag | - |
| NCBI Name | LOC131007277 |
| 原始查询 | LOC131007277 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component SEC15B |
| 产物 | exocyst complex component SEC15B |
| Arabidopsis | AT4G02350 (SEC15B)exocyst complex component sec15B [Source:NCBI gene (formerly Entrezgene);Acc:828060] identity=72.4; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0351300- identity=59.4; qcov=0.983; evalue=0; confidence=high |
| GO | GO:0000145 (exocyst); GO:0006886 (intracellular protein transport); GO:0006887 (exocytosis); GO:0006893 (Golgi to plasma membrane transport); GO:0016020 (membrane); GO:0090522 (GO:0090522) |
| KEGG | - |
| Pfam | PF04091 (Sec15_C); PF20651 (EXOC6_Sec15_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007277 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057790407.1 |
| 2 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057790407.1 |
| 3 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.60000 | XP_057790407.1 |
| 4 | Cytosol | 细胞质基质 | 0.60000 | XP_057790407.1 |
| 5 | Vesicle | 囊泡 | 0.60000 | XP_057790407.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:2703806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B33,B98,C14 |
Chr1:2704493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B76 |
Chr1:2705054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B76,D10 |
Chr1:2705098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B91,C57 |
Chr1:2705393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B76,D10 |
Chr1:2705500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:2705687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:2705690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:2705886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr1:2706154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,C19,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790407.1PF20651
EXOC6_Sec15_N 57-226 aa
PF04091
Sec15_C 417-763 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790407.1 |
Pfam | PF20651 |
EXOC6_Sec15_N | Repeat | 57 | 226 | 6.9e-47 | 160.3 | Exocyst complex component EXOC6/Sec15, N-terminal |
XP_057790407.1 |
Pfam | PF04091 |
Sec15_C | Repeat | 417 | 763 | 7.1e-94 | 315.7 | Exocyst complex subunit Sec15 C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。