当前解析结果
SmilChr01G000203| 统一新 Gene ID | SmilChr01G000203 |
|---|---|
| 名称 | SmilChr01G000203 |
| 描述 | uncharacterized SmilChr01G000203 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 3483309 - 3484678 / + |
| NCBI Gene ID | LOC131007304 |
|---|---|
| GeneID | 131007304 |
| locus_tag | - |
| NCBI Name | LOC131007304 |
| 原始查询 | LOC131007304 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253]; symbol=AT4G21660; hit=AT4G21660; species=arabidopsis; confidence=high |
| 产物 | proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253]; symbol=AT4G21660; hit=AT4G21660; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G21660 (AT4G21660)proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253] identity=78.5; qcov=0.699; evalue=3.27e-56; confidence=high |
| Rice | Os02g0827300- identity=74.8; qcov=0.72; evalue=5.8e-52; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0005684 (U2-type spliceosomal complex); GO:0005686 (U2 snRNP); GO:0005689 (U12-type spliceosomal complex); GO:0071011 (precatalytic spliceosome); GO:0071013 (catalytic step 2 spliceosome) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007304 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790428.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057790428.1 |
| 3 | Nucleoplasm | 核质 | 0.80000 | XP_057790428.1 |
| 4 | Cytosol | 细胞质基质 | 0.80000 | XP_057790428.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790428.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:3483652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B75 |
Chr1:3483803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr1:3483810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:3483818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C43,D8 |
Chr1:3483850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr1:3484007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr1:3484034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B13,C43,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。