当前解析结果
SmilChr01G000208| 统一新 Gene ID | SmilChr01G000208 |
|---|---|
| 名称 | SmilChr01G000208 |
| 描述 | kinesin-like protein KIN-14I |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 3616537 - 3623070 / - |
| NCBI Gene ID | LOC131007308 |
|---|---|
| GeneID | 131007308 |
| locus_tag | - |
| NCBI Name | LOC131007308 |
| 原始查询 | LOC131007308 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-14I |
| 产物 | kinesin-like protein KIN-14I |
| Arabidopsis | AT2G47500 (AT2G47500)P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819363] identity=63.9; qcov=0.986; evalue=0; confidence=high |
| Rice | Os12g0547500 (OsKCH1)- identity=54.6; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF00307 (CH); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007308 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057790432.1 |
| 2 | Phragmoplast | Phragmoplast | 1.00000 | XP_057790432.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057790432.1 |
| 4 | Spindle | Spindle | 0.40000 | XP_057790432.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057790432.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:3616998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,B55 |
Chr1:3617194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B49,B50,B56,B74,B96 |
Chr1:3617284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:3617404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,B55 |
Chr1:3617446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:3617492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:3617912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:3617970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B90,B92 |
Chr1:3618206 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:3618288 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:3618835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,B83 |
Chr1:3619169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790432.1PF00307
CH 45-162 aa
PF16796
Microtub_bd 374-532 aa
PF00225
Kinesin 394-712 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790432.1 |
Pfam | PF00307 |
CH | Domain | 45 | 162 | 3.4e-11 | 44.0 | Calponin homology (CH) domain |
XP_057790432.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 374 | 532 | 5.3e-45 | 153.8 | Microtubule binding |
XP_057790432.1 |
Pfam | PF00225 |
Kinesin | Domain | 394 | 712 | 5.3e-110 | 368.2 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。