Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000207`

染色体: Chr01 坐标: 3611556-3615423 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000207`
名称	SmilChr01G000207
描述	uncharacterized SmilChr01G000207
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	3611556 - 3615423 / `-`

ID 对照

NCBI Gene ID	`LOC131007309`
GeneID	`131007309`
locus_tag	`-`
NCBI Name	`LOC131007309`
原始查询	`LOC131007309`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828106]; symbol=AT4G02220; hit=AT4G02220; species=arabidopsis; confidence=high
产物	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828106]; symbol=AT4G02220; hit=AT4G02220; species=arabidopsis; confidence=high
Arabidopsis	`AT4G02220` (AT4G02220) zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828106] identity=58.8; qcov=0.909; evalue=2.14e-157; confidence=high
Rice	`Os03g0300200` - identity=51.3; qcov=1.02; evalue=3.04e-137; confidence=high
GO	GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF01753 (zf-MYND); PF04194 (PDCD2_C); PF30657 (PDCD2_N)
InterPro	-
eggNOG	-
NR	GeneID:131007309

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790433.1`
2	Cytoplasm	细胞质	1.00000	`XP_057790433.1`
3	Cytosol	细胞质基质	1.00000	`XP_057790433.1`
4	Nucleoplasm	核质	0.60000	`XP_057790433.1`
5	Chromosome	染色体	0.00000	`XP_057790433.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:3611955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,B32,B36
`Chr1:3611998`	`TG`	`T`	1bp_deletion	frameshift_variant	1	D11
`Chr1:3611998`	`TG`	`T`	1bp_deletion	CDS_variant	1	D11
`Chr1:3612229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr1:3612276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:3612689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:3612707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,B76
`Chr1:3612716`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr1:3613982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,B55
`Chr1:3614457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790433.1

406 aa

203

406

PDCD2_N

zf-MYND

PDCD2_C

PF30657 PDCD2_N 49-168 aa PF01753 zf-MYND 184-225 aa PF04194 PDCD2_C 296-397 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790433.1`	Pfam	`PF30657`	PDCD2_N	Domain	49	168	4.4e-43	146.6	Programmed cell death protein 2, N-terminal domain
`XP_057790433.1`	Pfam	`PF01753`	zf-MYND	Domain	184	225	1.9e-06	28.5	MYND finger
`XP_057790433.1`	Pfam	`PF04194`	PDCD2_C	Domain	296	397	1.9e-34	118.7	Programmed cell death protein 2, C-terminal putative domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934450.1
ACGAAATATCAACAGAAATTTTTGGCGCAAAACCCTAAAACCCTAACTTTTTCGCCGGCGATAAACGGTCAATTTTGTCCAATGCGATTGAAGTAGCTCGTAAACGGAAAGTTGCGAAGTTACTCGACAGAAATGGACATTGATTTCGAAGAAGAGAAGCTCAAATCTTTGCAGATATCATCTCTCAGTGACGAGGAGGATGAAGGCGGAGCTCCTAACGACGAGCCAGAGGATGCAGACAGTGATGAAATTGACGATGA...

CDS

1 records

下载 CDS FASTA

LOC131007309
ATGGACATTGATTTCGAAGAAGAGAAGCTCAAATCTTTGCAGATATCATCTCTCAGTGACGAGGAGGATGAAGGCGGAGCTCCTAACGACGAGCCAGAGGATGCAGACAGTGATGAAATTGACGATGAAGAAGATCAGATTCCCATGACTTTAGGGTTTGCGGAGAAGCCCAAAAATCCGTGGTCATCGCGCCGCCAATACTTCCCGAGTAAAGCTGGTGGCGCTCCGGCATGGTTGGACCCCATTAATTTGCCTTCGGG...

Protein

1 records

下载 Protein FASTA

XP_057790433.1
MDIDFEEEKLKSLQISSLSDEEDEGGAPNDEPEDADSDEIDDEEDQIPMTLGFAEKPKNPWSSRRQYFPSKAGGAPAWLDPINLPSGSSSLCDFCSEPLQFLLQVYAPLPEESTFHRTLFVFMCTSMSCLLRDQHEQWKRSPEVQSRSIKVFRCQLPRANPFYSSEAPAGDGSQQPLTAGAMLCDWCRAWKGDKICSGCKRVRYCSGKHQAAHWRSSSSSHKVLCQQLEASGKESELAASNSLWPEYEITCEDECDFDEP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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