当前解析结果
SmilChr02G000097| 统一新 Gene ID | SmilChr02G000097 |
|---|---|
| 名称 | SmilChr02G000097 |
| 描述 | uncharacterized SmilChr02G000097 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 1265967 - 1268801 / + |
| NCBI Gene ID | LOC131007565 |
|---|---|
| GeneID | 131007565 |
| locus_tag | - |
| NCBI Name | LOC131007565 |
| 原始查询 | LOC131007565 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00750- identity=34.7; qcov=0.087; evalue=9.07e-06; confidence=weak |
| Rice | Os08g0202300- identity=30.5; qcov=0.391; evalue=6.32e-43; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007565 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057790458.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057790458.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057790458.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057790458.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790458.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:1265994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C54 |
Chr2:1265995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B138,B91,C41 |
Chr2:1265996 |
CAT |
C |
2bp_deletion | frameshift_variant | 41 | A19,A2,A3,A5,B100,B113,B121,B129,B130,B136,B137,B14,B19,B29,B47,B48,B55,B64,B75,B77,B85,B92,C12,C16,C20,C21,C22,C29,C3,C33,C38,C62,C64,C65,C66,C7,C71,C78,C79,C84,D1 |
Chr2:1266006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,C28 |
Chr2:1266015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:1266017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C24,C53,C6,C87 |
Chr2:1266020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C24,C28,C6,C87 |
Chr2:1266033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B91,C41 |
Chr2:1266034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:1266054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B56,C58,C77 |
Chr2:1266074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,C54 |
Chr2:1266085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B137,C53,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790458.1PF00078
RVT_1 3-162 aa
PF17919
RT_RNaseH_2 183-281 aa
PF17917
RT_RNaseH 220-310 aa
PF13456
RVT_3 346-462 aa
PF17921
Integrase_H2C2 511-559 aa
PF00665
rve 577-668 aa
PF31073
DUF8803 771-831 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790458.1 |
Pfam | PF00078 |
RVT_1 | Domain | 3 | 162 | 3.9e-31 | 109.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057790458.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 183 | 281 | 8.4e-15 | 55.4 | RNase H-like domain found in reverse transcriptase |
XP_057790458.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 220 | 310 | 2.7e-14 | 53.9 | RNase H-like domain found in reverse transcriptase |
XP_057790458.1 |
Pfam | PF13456 |
RVT_3 | Domain | 346 | 462 | 2.4e-11 | 44.3 | Reverse transcriptase-like |
XP_057790458.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 511 | 559 | 1.3e-10 | 41.9 | Integrase zinc binding domain |
XP_057790458.1 |
Pfam | PF00665 |
rve | Domain | 577 | 668 | 1.1e-16 | 61.7 | Integrase core domain |
XP_057790458.1 |
Pfam | PF31073 |
DUF8803 | Domain | 771 | 831 | 1.4e-22 | 80.0 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。