当前解析结果
SmilChr02G001399| 统一新 Gene ID | SmilChr02G001399 |
|---|---|
| 名称 | SmilChr02G001399 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26575547 - 26585582 / + |
| NCBI Gene ID | LOC131007633 |
|---|---|
| GeneID | 131007633 |
| locus_tag | - |
| NCBI Name | LOC131007633 |
| 原始查询 | LOC131007633 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=51.3; qcov=1.01; evalue=2.07e-43; confidence=medium |
| Rice | Os01g0784700- identity=52.3; qcov=1.01; evalue=7.39e-44; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007633 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790523.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057790525.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057790523.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790523.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790523.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26575660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B57 |
Chr2:26575852 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B46 |
Chr2:26575852 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B46 |
Chr2:26575933 |
TCC |
T |
2bp_deletion | frameshift_variant | 7 | A15,A4,B45,B57,B90,B92,C12 |
Chr2:26575947 |
G |
GA |
1bp_insertion | frameshift_variant | 7 | A15,A4,B45,B57,B90,B92,C12 |
Chr2:26575956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:26576167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C58 |
Chr2:26576215 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:26576237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:26576240 |
AC |
A |
1bp_deletion | frameshift_variant | 7 | A15,A4,B45,B57,B90,B92,C12 |
Chr2:26576312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr2:26576486 |
CA |
C |
1bp_deletion | frameshift_variant | 17 | A10,A16,A3,B11,B127,B3,B31,B67,B74,B84,C29,C30,C43,C46,C6,C79,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790523.1PF01453
B_lectin 86-191 aa
PF00954
S_locus_glycop 223-329 aa
PF08276
PAN_2 351-417 aa
PF00069
Pkinase 505-768 aa
PF07714
PK_Tyr_Ser-Thr 505-771 aa
PF11883
DUF3403 776-820 aa
XP_057790524.1PF00954
S_locus_glycop 115-221 aa
PF08276
PAN_2 243-309 aa
PF00069
Pkinase 397-660 aa
PF07714
PK_Tyr_Ser-Thr 397-663 aa
PF11883
DUF3403 668-712 aa
XP_057790525.1PF07714
PK_Tyr_Ser-Thr 1-101 aa
PF11883
DUF3403 104-149 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790523.1 |
Pfam | PF01453 |
B_lectin | Repeat | 86 | 191 | 2.3e-32 | 112.3 | D-mannose binding lectin |
XP_057790523.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 223 | 329 | 1.4e-23 | 84.3 | S-locus glycoprotein domain |
XP_057790523.1 |
Pfam | PF08276 |
PAN_2 | Domain | 351 | 417 | 7.1e-18 | 65.2 | PAN-like domain |
XP_057790523.1 |
Pfam | PF00069 |
Pkinase | Domain | 505 | 768 | 2.5e-41 | 142.6 | Protein kinase domain |
XP_057790523.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 505 | 771 | 4.2e-46 | 158.1 | Protein tyrosine and serine/threonine kinase |
XP_057790523.1 |
Pfam | PF11883 |
DUF3403 | Family | 776 | 820 | 7e-07 | 30.0 | Domain of unknown function (DUF3403) |
XP_057790524.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 115 | 221 | 1.1e-23 | 84.5 | S-locus glycoprotein domain |
XP_057790524.1 |
Pfam | PF08276 |
PAN_2 | Domain | 243 | 309 | 5.9e-18 | 65.5 | PAN-like domain |
XP_057790524.1 |
Pfam | PF00069 |
Pkinase | Domain | 397 | 660 | 1.9e-41 | 143.0 | Protein kinase domain |
XP_057790524.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 397 | 663 | 3e-46 | 158.6 | Protein tyrosine and serine/threonine kinase |
XP_057790524.1 |
Pfam | PF11883 |
DUF3403 | Family | 668 | 712 | 6.4e-07 | 30.1 | Domain of unknown function (DUF3403) |
XP_057790525.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 1 | 101 | 5.7e-08 | 33.1 | Protein tyrosine and serine/threonine kinase |
XP_057790525.1 |
Pfam | PF11883 |
DUF3403 | Family | 104 | 149 | 7e-08 | 33.2 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。