当前解析结果
SmilChr02G001394| 统一新 Gene ID | SmilChr02G001394 |
|---|---|
| 名称 | SmilChr02G001394 |
| 描述 | transcription factor MYB44-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26482916 - 26484492 / - |
| NCBI Gene ID | LOC131007640 |
|---|---|
| GeneID | 131007640 |
| locus_tag | - |
| NCBI Name | LOC131007640 |
| 原始查询 | LOC131007640 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB44-like |
| 产物 | transcription factor MYB44-like |
| Arabidopsis | AT5G67300 (MYBR1)myb domain protein r1 [Source:NCBI gene (formerly Entrezgene);Acc:836865] identity=56.6; qcov=0.778; evalue=9.37e-59; confidence=high |
| Rice | Os09g0106700 (R2R3-MYB)- identity=75.2; qcov=0.483; evalue=5.07e-58; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007640 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790533.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057790533.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057790533.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057790533.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057790533.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26483000 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | C41 |
Chr2:26483000 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | C41 |
Chr2:26483001 |
CT |
C |
1bp_deletion | frameshift_variant | 12 | A18,A20,B121,B131,B24,B40,B68,B80,B9,C78,C8,D5 |
Chr2:26483002 |
TC |
T |
1bp_deletion | frameshift_variant | 54 | A1,A16,A23,A24,B1,B100,B102,B106,B107,B108,B109,B111,B112,B115,B117,B125,B127,B13,B135,B136,B139,B14,B140,B3,B54,B55,B56,B59,B7,B70,B75,B76,B77,B87,B96,C1,C14,C15,C21,C28,C33,C34,C4,C40,C45,C49,C50,C55,C57,C68,C77,C81,C82,D8 |
Chr2:26483009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B51,B59,C15 |
Chr2:26483054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:26483068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr2:26483121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B121,B22,B68,C19 |
Chr2:26483124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B133,B30,B50,B77,C13 |
Chr2:26483160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr2:26483166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C1,C60,C86 |
Chr2:26483168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C81,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790533.1PF00249
Myb_DNA-binding 13-59 aa
PF13921
Myb_DNA-bind_6 16-74 aa
PF00249
Myb_DNA-binding 66-109 aa
PF13921
Myb_DNA-bind_6 68-112 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790533.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 13 | 59 | 6.9e-35 | 119.6 | Myb-like DNA-binding domain |
XP_057790533.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 16 | 74 | 1e-25 | 90.3 | Myb-like DNA-binding domain |
XP_057790533.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 66 | 109 | 6.9e-35 | 119.6 | Myb-like DNA-binding domain |
XP_057790533.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 68 | 112 | 1e-25 | 90.3 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。