Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001498`

染色体: Chr02 坐标: 27933258-27936513 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001498`
名称	SmilChr02G001498
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27933258 - 27936513 / `-`

ID 对照

NCBI Gene ID	`LOC131007654`
GeneID	`131007654`
locus_tag	`-`
NCBI Name	`LOC131007654`
原始查询	`LOC131007654`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=43; qcov=1.01; evalue=0; confidence=medium
Rice	`Os03g0556600` - identity=41.2; qcov=1.07; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007654

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790559.1`
2	Nucleus	细胞核	0.00000	`XP_057790559.1`
3	Chromosome	染色体	0.00000	`XP_057790559.1`
4	Centromere	着丝粒	0.00000	`XP_057790559.1`
5	Chromatin	染色质	0.00000	`XP_057790559.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27933536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:27933688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B26,D3
`Chr2:27933824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:27934489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,B124,B61,C51
`Chr2:27934525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B26,D3
`Chr2:27934661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B26,D3
`Chr2:27934814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:27934815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:27934850`	`GA`	`G`	1bp_deletion	frameshift_variant	3	A13,C47,C8
`Chr2:27934850`	`GA`	`G`	1bp_deletion	CDS_variant	3	A13,C47,C8
`Chr2:27934897`	`GT`	`G`	1bp_deletion	frameshift_variant	50	A15,A16,A4,A8,B1,B100,B102,B108,B112,B117,B13,B133,B136,B139,B140,B15,B25,B29,B38,B39,B45,B48,B55,B56,B59,B7,B71,B75,B90,B92,B96,B97,B99,C12,C13,C19,C21,C23,C24,C28,C32,C46,C54,C55,C59,C62,C68,C80,D8,D9
`Chr2:27934943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,C78,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790559.1

830 aa

415

830

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 93-195 aa PF00954 S_locus_glycop 227-334 aa PF08276 PAN_2 356-422 aa PF00069 Pkinase 519-720 aa PF07714 PK_Tyr_Ser-Thr 519-786 aa

XP_057790560.1

809 aa

404

809

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 93-195 aa PF00954 S_locus_glycop 227-334 aa PF08276 PAN_2 356-422 aa PF00069 Pkinase 519-662 aa PF07714 PK_Tyr_Ser-Thr 519-662 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790559.1`	Pfam	`PF01453`	B_lectin	Repeat	93	195	1.2e-27	97.1	D-mannose binding lectin
`XP_057790559.1`	Pfam	`PF00954`	S_locus_glycop	Domain	227	334	2.2e-21	77.2	S-locus glycoprotein domain
`XP_057790559.1`	Pfam	`PF08276`	PAN_2	Domain	356	422	2.8e-18	66.5	PAN-like domain
`XP_057790559.1`	Pfam	`PF00069`	Pkinase	Domain	519	720	6e-44	151.1	Protein kinase domain
`XP_057790559.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	519	786	3e-43	148.7	Protein tyrosine and serine/threonine kinase
`XP_057790560.1`	Pfam	`PF01453`	B_lectin	Repeat	93	195	1.1e-27	97.2	D-mannose binding lectin
`XP_057790560.1`	Pfam	`PF00954`	S_locus_glycop	Domain	227	334	2.1e-21	77.2	S-locus glycoprotein domain
`XP_057790560.1`	Pfam	`PF08276`	PAN_2	Domain	356	422	2.7e-18	66.6	PAN-like domain
`XP_057790560.1`	Pfam	`PF00069`	Pkinase	Domain	519	662	5.7e-34	118.4	Protein kinase domain
`XP_057790560.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	519	662	2.3e-36	126.2	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934577.1
TTTTCTGCAATTTTTCAAGACTTGTGCAAAAACAAATATAACATCCAGTCATCCACCACTCTAGTTGTACTATTTTTTTACTTTTACCTCTATAAATACAATGTATTCAACTTTCAAGGAAGAACTGAAACCAAACATGATTTTTTTGTTATGATGCTTACGGCTCTTGAGCTCCTCCGTTTTAATTTCTTTTCATCTTTGAACAATATGGCGAATGTGATGTTCGCCAAGATCGTCTATAAGCTGTCTTTTTTAATCAT...

XM_057934576.1
TTCTGCAATTTTTCAAGACTTGTGCAAAAACAAATATAACATCCAGTCATCCACCACTCTAGTTGTACTATTTTTTTACTTTTACCTCTATAAATACAATGTATTCAACTTTCAAGGAAGAACTGAAACCAAACATGATTTTTTTGTTATGATGCTTACGGCTCTTGAGCTCCTCCGTTTTAATTTCTTTTCATCTTTGAACAATATGGCGAATGTGATGTTCGCCAAGATCGTCTATAAGCTGTCTTTTTTAATCATGT...

CDS

2 records

下载 CDS FASTA

LOC131007654
ATGATGCTTACGGCTCTTGAGCTCCTCCGTTTTAATTTCTTTTCATCTTTGAACAATATGGCGAATGTGATGTTCGCCAAGATCGTCTATAAGCTGTCTTTTTTAATCATGTTTCTAAGAATCACTTTTTCAATAGACACACTTCTCCCGAACCAAACAATTGGCACTGGGCAGACTTTGGTTAGTGAAAACCAAATTTTCGAGTTGCATTTTTTCAGCCCTGGAAAATCAAGAAATGTGTTCTTGGGAATACGGTACAA...

Protein

2 records

下载 Protein FASTA

XP_057790559.1
MMLTALELLRFNFFSSLNNMANVMFAKIVYKLSFLIMFLRITFSIDTLLPNQTIGTGQTLVSENQIFELHFFSPGKSRNVFLGIRYKSTPDVVVWVANRNNPITISQGVVLAISGNGSVVISRGGSIIWSGNPSGVASNPLLQLLDTGNLVVVDETTRRYIWQSFDYPGDTWWPGMKLVAGDMDGGGETYLTSWRNSDDPSPGDIVFRIVNQGMPELVAYRGENKVFRSGQWNGILFSSSPPSGNTVFKAKFELRGDRLI...

XP_057790560.1
MMLTALELLRFNFFSSLNNMANVMFAKIVYKLSFLIMFLRITFSIDTLLPNQTIGTGQTLVSENQIFELHFFSPGKSRNVFLGIRYKSTPDVVVWVANRNNPITISQGVVLAISGNGSVVISRGGSIIWSGNPSGVASNPLLQLLDTGNLVVVDETTRRYIWQSFDYPGDTWWPGMKLVAGDMDGGGETYLTSWRNSDDPSPGDIVFRIVNQGMPELVAYRGENKVFRSGQWNGILFSSSPPSGNTVFKAKFELRGDRLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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