Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001412`

染色体: Chr02 坐标: 26752421-26757121 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001412`
名称	SmilChr02G001412
描述	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	26752421 - 26757121 / `-`

ID 对照

NCBI Gene ID	`LOC131007659`
GeneID	`131007659`
locus_tag	`-`
NCBI Name	`LOC131007659`
原始查询	`LOC131007659`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
产物	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
Arabidopsis	`AT4G27300` (AT4G27300) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828838] identity=61.6; qcov=0.977; evalue=1.17e-118; confidence=high
Rice	`Os01g0784200` - identity=59.2; qcov=0.968; evalue=3.63e-122; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007659

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790564.1`
2	Cytosol	细胞质基质	0.40000	`XP_057790565.1`
3	Nucleus	细胞核	0.00000	`XP_057790564.1`
4	Chromosome	染色体	0.00000	`XP_057790564.1`
5	Centromere	着丝粒	0.00000	`XP_057790564.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:26753327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr2:26753462`	`T`	`TGC`	2bp_insertion	frameshift_variant	4	A14,B35,D1,D7
`Chr2:26753462`	`T`	`TGC`	2bp_insertion	CDS_variant	4	A14,B35,D1,D7
`Chr2:26753514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B78
`Chr2:26753740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:26753815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B40
`Chr2:26753873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,A2,B40,C5
`Chr2:26753990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B69,C64,C66,C74
`Chr2:26754017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr2:26754468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr2:26755024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:26755104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790564.1

818 aa

409

818

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 87-186 aa PF00954 S_locus_glycop 218-325 aa PF08276 PAN_2 347-413 aa PF00069 Pkinase 507-706 aa PF07714 PK_Tyr_Ser-Thr 509-775 aa

XP_057790565.1

309 aa

154

309

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 18-198 aa PF07714 PK_Tyr_Ser-Thr 18-266 aa

XP_057790566.1

309 aa

154

309

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 18-198 aa PF07714 PK_Tyr_Ser-Thr 18-266 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790564.1`	Pfam	`PF01453`	B_lectin	Repeat	87	186	1.2e-29	103.5	D-mannose binding lectin
`XP_057790564.1`	Pfam	`PF00954`	S_locus_glycop	Domain	218	325	8.6e-17	62.4	S-locus glycoprotein domain
`XP_057790564.1`	Pfam	`PF08276`	PAN_2	Domain	347	413	2.9e-18	66.5	PAN-like domain
`XP_057790564.1`	Pfam	`PF00069`	Pkinase	Domain	507	706	4.7e-45	154.7	Protein kinase domain
`XP_057790564.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	509	775	1.2e-46	159.9	Protein tyrosine and serine/threonine kinase
`XP_057790565.1`	Pfam	`PF00069`	Pkinase	Domain	18	198	5e-41	141.6	Protein kinase domain
`XP_057790565.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	18	266	5.7e-44	151.1	Protein tyrosine and serine/threonine kinase
`XP_057790566.1`	Pfam	`PF00069`	Pkinase	Domain	18	198	5e-41	141.6	Protein kinase domain
`XP_057790566.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	18	266	5.7e-44	151.1	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057934581.1
ATGCTCCGCATTACAAATAAGTGACGATAAATCTTGCATGCATATGACGTAAGAATCGTGATAACGGGTCACCCTGATAAAATGTTTTCTATCCAATCATTAAATCAAAAATTCAAGTCACCATAGAGAAAAAATAAAGAATTATTATTGTTCCCTCGAATTAATGAGCTATCTCTATAACGAATAAACTTCGAAAATCATGGAGACTTTGACAAGTATGATTTTACTTTTCCTGTAAAGAAATAAATTAGCAGTCAAAT...

XM_057934582.1
GCGGCTTATGCTAATTCGTTTATCACCAACGGGGGTAGTGGCTGCTTGATGTGGTTCGGTGATCTAATTGATACCAAACAACTTTCTTCAGCAGATAGTAAGCAAAACATCTACATCCGTGTGCCCTTTTCTGAACTTGATTTCAACTCGGGTTTAGAGGAGGAGAAGGAGAAGAAAAGGCCTACGAAGTTGATACTGATATCAATGGCTTCTGGTGTTCTCGTTTCAGCCATTATCAATGGAGGTGTACTTTTCATGGC...

CDS

3 records

下载 CDS FASTA

LOC131007659
ATGAAATCAAACTTACTAGATTTGAGCATGGCGCAGTTGTTCTTGTGCACTTCAATCCTCTGTTATCTGCTTCATTCCATCTCTTTTCTGAGTTTAACAGTTGGAGCAGTTGACTATTGCAGTCTTTTACCAAATCAAACACTTGTTCTTGGGCAGACTCTCATTTCTCAAAACCAAATTTTTGAAATGGGTTTCTTCTCGCCTGGAAAATTTTCAAACAGATTCTTGGGAATATGGTACAAGAGCACACCAGAAGTTGT...

LOC131007659
ATGGAGGTGTACTTTTCATGGCAAGACGAAAGAGTCAAGGGGAACATGCCATCAGGTGAAGAAATAGCTGTCAAAAGATTGTCGAGATCTTCACAACAGGGTCTGGAAGAGTTCAGAAATGAAGTTATGGTGATTGCAAAACTTCAACATAGAAACCTCGTCAGACTATTGGGATGCTGCATTGATGAGGACGAAAGGATGCTCATCTATGAATACCTGCAGAATAAAAGCCTCGACTATTTTGTTTTTGATCACAGCCG...

Protein

3 records

下载 Protein FASTA

XP_057790564.1
MKSNLLDLSMAQLFLCTSILCYLLHSISFLSLTVGAVDYCSLLPNQTLVLGQTLISQNQIFEMGFFSPGKFSNRFLGIWYKSTPEVVVWVANRNHPITASQPPVFMISRNGSLVISSGKSIIWLANSSVVATNPVLQLLDSGNMVVADNMSTIWQSFDYPTDTMLPGTKFVDDVDAGVERYLTSWRNPDDPSPGDFVHKIQNRGLADMVTLRGATKRYRIGQWNGQYYGGGQPFPSAVCKPEMVFRQERLVSVGEPYESS...

XP_057790565.1
MEVYFSWQDERVKGNMPSGEEIAVKRLSRSSQQGLEEFRNEVMVIAKLQHRNLVRLLGCCIDEDERMLIYEYLQNKSLDYFVFDHSRRILLTWPKRYDIIMGIARGLLYLHHDSRLKIIHRDLKTSNILLDGNLAPKISDFGLARIFEEDQSLARTKRVVGTYGYMAPEYAIDGKFSVKSDVFSLGVVVLEIISGKKNRGYGDPDHYLNLLGHAWLLWKENKILELMDESLHDTYTESQVKRCMQVGLLCVQKFAEDRPN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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