当前解析结果
SmilChr02G001475| 统一新 Gene ID | SmilChr02G001475 |
|---|---|
| 名称 | SmilChr02G001475 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 27550340 - 27554003 / + |
| NCBI Gene ID | LOC131007670 |
|---|---|
| GeneID | 131007670 |
| locus_tag | - |
| NCBI Name | LOC131007670 |
| 原始查询 | LOC131007670 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=44.6; qcov=0.999; evalue=0; confidence=medium |
| Rice | Os04g0633200- identity=42.3; qcov=1.01; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007670 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790585.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790585.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790585.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790585.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790585.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:27550818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:27550819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:27550821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr2:27550849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:27551176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:27551179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,A3,B42,B43 |
Chr2:27551225 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr2:27551653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr2:27551705 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr2:27551821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,B42 |
Chr2:27551886 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr2:27551910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790585.1PF01453
B_lectin 76-179 aa
PF00954
S_locus_glycop 211-319 aa
PF08276
PAN_2 340-406 aa
PF00069
Pkinase 499-707 aa
PF07714
PK_Tyr_Ser-Thr 501-749 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790585.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 179 | 1.1e-30 | 106.9 | D-mannose binding lectin |
XP_057790585.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 211 | 319 | 4.3e-21 | 76.3 | S-locus glycoprotein domain |
XP_057790585.1 |
Pfam | PF08276 |
PAN_2 | Domain | 340 | 406 | 7.6e-18 | 65.1 | PAN-like domain |
XP_057790585.1 |
Pfam | PF00069 |
Pkinase | Domain | 499 | 707 | 6e-46 | 157.7 | Protein kinase domain |
XP_057790585.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 501 | 749 | 3.8e-47 | 161.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。