Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001457`

染色体: Chr02 坐标: 27267807-27269888 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001457`
名称	SmilChr02G001457
描述	S-locus-specific glycoprotein S6-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27267807 - 27269888 / `+`

ID 对照

NCBI Gene ID	`LOC131007680`
GeneID	`131007680`
locus_tag	`-`
NCBI Name	`LOC131007680`
原始查询	`LOC131007680`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-locus-specific glycoprotein S6-like
产物	S-locus-specific glycoprotein S6-like
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=36.3; qcov=0.985; evalue=1.43e-105; confidence=medium
Rice	`Os04g0632901` - identity=35.7; qcov=0.965; evalue=8.46e-97; confidence=medium
GO	GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00954 (S_locus_glycop); PF01453 (B_lectin); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007680

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057790596.1`
2	Secreted	分泌到胞外	0.40000	`XP_057790596.1`
3	Nucleus	细胞核	0.00000	`XP_057790596.1`
4	Chromosome	染色体	0.00000	`XP_057790596.1`
5	Centromere	着丝粒	0.00000	`XP_057790596.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27267882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:27268022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C34,C40,D3
`Chr2:27268059`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B40
`Chr2:27268059`	`TG`	`T`	1bp_deletion	CDS_variant	1	B40
`Chr2:27268139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr2:27268325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:27268428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr2:27268451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:27268525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:27268711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,A7,B5,C61
`Chr2:27268758`	`T`	`TGC`	2bp_insertion	frameshift_variant	1	B37
`Chr2:27268758`	`T`	`TGC`	2bp_insertion	CDS_variant	1	B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790596.1

537 aa

268

537

B_lectin

S_locus_glycop

PAN_2

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790596.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	2.3e-30	105.9	D-mannose binding lectin
`XP_057790596.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	1.1e-20	74.9	S-locus glycoprotein domain
`XP_057790596.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	5.1e-21	75.3	PAN-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934613.1
CATCAAAGTCTTCTACTTCATCTTTTTTGGTGACTAAATAGGATCGCCAGGAAAATGGCGTCTTTCTATTTCACTGCAATTCTCAGCTCTTTGGTTTACTCCATCGCGTTTCTCAAATCAACCACTGGAGCAGATCATTCACTTTTCAACAACCAAACCCTTGCTATTGGCCACACTTTGGTTTCTGAGACCCAAGTTTTTGAGCTCGGGTTTTTCCGCCCTGGAAAATCAGCGAATTTGTTCTTAGGGATATGGTACAA...

CDS

1 records

下载 CDS FASTA

LOC131007680
ATGGCGTCTTTCTATTTCACTGCAATTCTCAGCTCTTTGGTTTACTCCATCGCGTTTCTCAAATCAACCACTGGAGCAGATCATTCACTTTTCAACAACCAAACCCTTGCTATTGGCCACACTTTGGTTTCTGAGACCCAAGTTTTTGAGCTCGGGTTTTTCCGCCCTGGAAAATCAGCGAATTTGTTCTTAGGGATATGGTACAAAGCCATACCTGATACAGTAGTTTGGGTTGCAAACAGAAACAATCCCATCACTGA...

Protein

1 records

下载 Protein FASTA

XP_057790596.1
MASFYFTAILSSLVYSIAFLKSTTGADHSLFNNQTLAIGHTLVSETQVFELGFFRPGKSANLFLGIWYKAIPDTVVWVANRNNPITDSQGVVFAVAGNGTLLISTSGSVIWSANPSTAASRPVVRLLETGNLVVVDEATEEGFYIWQSFDFPTDTWLSGMKMVDDLDAGVSTNLTSWRNWDDPSPGDFFAKIESHAMGEMVMYRGTRKRFRTGKWNGIYFNGMPRFRSTVPATELIFKEERLISIKMPYQSSIIVRATLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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