当前解析结果
SmilChr02G001414| 统一新 Gene ID | SmilChr02G001414 |
|---|---|
| 名称 | SmilChr02G001414 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26763248 - 26763834 / - |
| NCBI Gene ID | LOC131007708 |
|---|---|
| GeneID | 131007708 |
| locus_tag | - |
| NCBI Name | LOC131007708 |
| 原始查询 | LOC131007708 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT1G61500 (AT1G61500)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842444] identity=66.3; qcov=0.941; evalue=1.82e-41; confidence=medium |
| Rice | Os07g0550500- identity=69.5; qcov=0.941; evalue=1.24e-44; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007708 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057790626.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057790626.1 |
| 3 | Cell membrane | 细胞膜 | 0.60000 | XP_057790626.1 |
| 4 | Membrane raft | 膜筏 | 0.20000 | XP_057790626.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057790626.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26763359 |
G |
GGA |
2bp_insertion | frameshift_variant | 76 | A1,A18,A2,A20,A6,A7,A8,A9,B10,B103,B106,B110,B117,B122,B124,B126,B132,B137,B19,B20,B25,B32,B33,B34,B37,B41,B45,B46,B50,B52,B53,B54,B59,B60,B63,B65,B7,B71,B72,B73,B79,B81,B83,B84,B86,B89,B9,B94,B99,C10,C16,C26,C27,C28,C35,C36,C37,C41,C47,C48,C50,C53,C6,C60,C61,C64,C66,C74,C75,C8,C82,C83,C87,C9,D11,D3 |
Chr2:26763376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B40 |
Chr2:26763433 |
G |
GAT |
2bp_insertion | frameshift_variant | 1 | D10 |
Chr2:26763433 |
G |
GAT |
2bp_insertion | CDS_variant | 1 | D10 |
Chr2:26763435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:26763436 |
TGC |
T |
2bp_deletion | frameshift_variant | 1 | D10 |
Chr2:26763436 |
TGC |
T |
2bp_deletion | CDS_variant | 1 | D10 |
Chr2:26763437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr2:26763560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:26763590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr2:26763690 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B129,B91 |
Chr2:26763690 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B129,B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790626.1PF00069
Pkinase 3-95 aa
PF07714
PK_Tyr_Ser-Thr 5-96 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790626.1 |
Pfam | PF00069 |
Pkinase | Domain | 3 | 95 | 1.2e-09 | 38.7 | Protein kinase domain |
XP_057790626.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 5 | 96 | 1.8e-16 | 61.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。