当前解析结果
SmilChr02G004480| 统一新 Gene ID | SmilChr02G004480 |
|---|---|
| 名称 | SmilChr02G004480 |
| 描述 | uncharacterized SmilChr02G004480 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 67265382 - 67267034 / + |
| NCBI Gene ID | LOC131007762 |
|---|---|
| GeneID | 131007762 |
| locus_tag | - |
| NCBI Name | LOC131007762 |
| 原始查询 | LOC131007762 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Sterile alpha motif (SAM) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838145]; symbol=AT1G15760; hit=AT1G15760; species=arabidopsis; confidence=high |
| 产物 | Sterile alpha motif (SAM) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838145]; symbol=AT1G15760; hit=AT1G15760; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G15760 (AT1G15760)Sterile alpha motif (SAM) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838145] identity=51.4; qcov=0.972; evalue=5.16e-63; confidence=high |
| Rice | Os06g0645500- identity=66.1; qcov=0.29; evalue=3.58e-26; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007762 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057790664.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057790664.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057790664.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790664.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790664.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:67266064 |
ATC |
A |
2bp_deletion | frameshift_variant | 38 | A14,A15,A20,A22,B102,B103,B108,B127,B129,B136,B22,B29,B35,B50,B51,B54,B58,B61,B65,B67,B79,B84,B99,C1,C15,C19,C22,C23,C29,C43,C48,C5,C55,C58,C65,C70,D11,D4 |
Chr2:67266362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:67266365 |
AG |
A |
1bp_deletion | frameshift_variant | 4 | B61,B68,C13,C41 |
Chr2:67266365 |
AG |
A |
1bp_deletion | CDS_variant | 4 | B61,B68,C13,C41 |
Chr2:67266381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B44 |
Chr2:67266386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:67266588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:67266606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。