Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001292

染色体: Chr02 坐标: 23739913-23745731 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001292
名称SmilChr02G001292
描述kinesin-like protein KIN-14N
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向23739913 - 23745731 / -

ID 对照

NCBI Gene IDLOC131007781
GeneID131007781
locus_tag-
NCBI NameLOC131007781
原始查询LOC131007781

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述kinesin-like protein KIN-14N
产物kinesin-like protein KIN-14N
ArabidopsisAT5G54670 (ATK3)
kinesin 3 [Source:NCBI gene (formerly Entrezgene);Acc:835556]
identity=62.5; qcov=0.992; evalue=0; confidence=high
RiceOs07g0105700 (OsDLK)
-
identity=59.8; qcov=0.941; evalue=0; confidence=high
GOGO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGG-
PfamPF00225 (Kinesin); PF16796 (Microtub_bd)
InterPro-
eggNOG-
NRGeneID:131007781

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057790680.1
2 Spindle Spindle 1.00000 XP_057790680.1
3 Midbody Midbody 1.00000 XP_057790683.1
4 Phragmoplast Phragmoplast 0.80000 XP_057790680.1
5 Spindle pole Spindle pole 0.80000 XP_057790680.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:23744792 G A EMS_canonical_SNV CDS_variant 1 B114
Chr2:23744807 C T EMS_canonical_SNV CDS_variant 4 B13,C30,C54,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790680.1
799 aa
N
1
400
799
Microtub_bd
Kinesin
C
PF16796 Microtub_bd 423-587 aa PF00225 Kinesin 447-777 aa
XP_057790682.1
799 aa
N
1
400
799
Microtub_bd
Kinesin
C
PF16796 Microtub_bd 423-587 aa PF00225 Kinesin 447-777 aa
XP_057790683.1
763 aa
N
1
382
763
Microtub_bd
Kinesin
C
PF16796 Microtub_bd 387-551 aa PF00225 Kinesin 411-741 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790680.1 Pfam PF16796 Microtub_bd Domain 423 587 4.5e-53 180.0 Microtubule binding
XP_057790680.1 Pfam PF00225 Kinesin Domain 447 777 3.3e-111 372.1 Kinesin motor domain
XP_057790682.1 Pfam PF16796 Microtub_bd Domain 423 587 4.5e-53 180.0 Microtubule binding
XP_057790682.1 Pfam PF00225 Kinesin Domain 447 777 3.3e-111 372.1 Kinesin motor domain
XP_057790683.1 Pfam PF16796 Microtub_bd Domain 387 551 4e-53 180.2 Microtubule binding
XP_057790683.1 Pfam PF00225 Kinesin Domain 411 741 3e-111 372.3 Kinesin motor domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057934697.1
CCCTTCTCCATCTCTCTCACTCTCTCTCTCTACACTCTCTCTCTAGCCGGATCGCCATACTCTTTCTTCCCCAGTCAAACCTACCTTCCTTCACATCTCACCAAAATTACCAGTTCATTACTCCACCAATTTCTTCATTCCCTATCAAAAGGAAGACGAAAGTAGCAATACCCAATTTTATCCTAATTTTTATCATCTTAAGCTTCAGAAAAGGAACCCAGAATTTTAACTGTCAGTAATCTGTAATTCCACACTCCACT...
XM_057934699.1
CCTTCTCCATCTCTCTCACTCTCTCTCTCTACACTCTCTCTCTAGCCGGATCGCCATACTCTTTCTTCCCCAGTCAAACCTACCTTCCTTCACATCTCACCAAAATTACCAGTTCATTACTCCACCAATTTCTTCATTCCCTATCAAAAGGAAGACGAAAGTAGCAATACCCAATTTTATCCTAATTTTTATCATCTTAAGCTTCAGAAAAGGAACCCAGAATTTTAACTCTTCCATTGCAATAAAGGGCGGTCCCACCA...

CDS

3 records

下载 CDS FASTA
LOC131007781
ATGGCTTCCAAGAACCAGAATAAGGCTCCTTCCAGCCCTTCACAAAGCAAGTGTAGCGGTATCGATGAGGTTTCCATAGATAAGAGGAGAAAGATTGCAAGCACAAAAATGCCACCTAACACTGGACCACGAACGCAAACTCGTCAAGCATTTTCAATTGTAAATGGGGGCCAAGATCTACCCCCACTCAGTGGGCCGCCAAGCAATTCTGGTTCTGATTGTGGTGCAATTGAGTTCAGCAAAGATGATGTCGATGCATT...
LOC131007781
ATGGCTTCCAAGAACCAGAATAAGGCTCCTTCCAGCCCTTCACAAAGCAAGTGTAGCGGTATCGATGAGGTTTCCATAGATAAGAGGAGAAAGATTGCAAGCACAAAAATGCCACCTAACACTGGACCACGAACGCAAACTCGTCAAGCATTTTCAATTGTAAATGGGGGCCAAGATCTACCCCCACTCAGTGGGCCGCCAAGCAATTCTGGTTCTGATTGTGGTGCAATTGAGTTCAGCAAAGATGATGTCGATGCATT...

Protein

3 records

下载 Protein FASTA
XP_057790680.1
MASKNQNKAPSSPSQSKCSGIDEVSIDKRRKIASTKMPPNTGPRTQTRQAFSIVNGGQDLPPLSGPPSNSGSDCGAIEFSKDDVDALLNEKLKKNLNYREKNDKMVDLIKRLKQCIKSFQQREANYVEEQETSKKLLELTEKKCSDSELMMKAKEDELNSIIMELRKNLEALQSKFAKEEVDRLEALDSLARERDLRVAAEKLQASLSEDLRRSQLDNDSANHKIQSLNDTYRRLQEFNTSLHQWNTRLQSDLETTNTTL...
XP_057790682.1
MASKNQNKAPSSPSQSKCSGIDEVSIDKRRKIASTKMPPNTGPRTQTRQAFSIVNGGQDLPPLSGPPSNSGSDCGAIEFSKDDVDALLNEKLKKNLNYREKNDKMVDLIKRLKQCIKSFQQREANYVEEQETSKKLLELTEKKCSDSELMMKAKEDELNSIIMELRKNLEALQSKFAKEEVDRLEALDSLARERDLRVAAEKLQASLSEDLRRSQLDNDSANHKIQSLNDTYRRLQEFNTSLHQWNTRLQSDLETTNTTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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