Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001538`

染色体: Chr02 坐标: 28607906-28617563 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001538`
名称	SmilChr02G001538
描述	myosin-2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	28607906 - 28617563 / `-`

ID 对照

NCBI Gene ID	`LOC131007822`
GeneID	`131007822`
locus_tag	`-`
NCBI Name	`LOC131007822`
原始查询	`LOC131007822`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	myosin-2-like
产物	myosin-2-like
Arabidopsis	`AT5G54280` (ATM2) myosin 2 [Source:NCBI gene (formerly Entrezgene);Acc:835516] identity=56.1; qcov=1.04; evalue=0; confidence=high
Rice	`Os07g0562800` (OsMyoVIIIA) - identity=51.9; qcov=1.05; evalue=0; confidence=high
GO	GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00063 (Myosin_head); PF00612 (IQ); PF25369 (SH3_VIII-1_N)
InterPro	-
eggNOG	-
NR	GeneID:131007822

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057790720.1`
2	Cell membrane	细胞膜	0.40000	`XP_057790720.1`
3	Nucleus	细胞核	0.00000	`XP_057790720.1`
4	Chromosome	染色体	0.00000	`XP_057790720.1`
5	Centromere	着丝粒	0.00000	`XP_057790720.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:28608308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr2:28608313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:28608382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr2:28608443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B138,B90,B92,C21,C73
`Chr2:28608444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:28609138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:28609401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B53
`Chr2:28609408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B53
`Chr2:28609427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B72,B94,C32,C68
`Chr2:28609479`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr2:28609606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr2:28609615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790720.1

1196 aa

598

1196

SH3_VIII-1_N

Myosin_head

PF25369 SH3_VIII-1_N 139-183 aa PF00063 Myosin_head 191-851 aa PF00612 IQ 892-908 aa PF00612 IQ 929-945 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790720.1`	Pfam	`PF25369`	SH3_VIII-1_N	Domain	139	183	2.9e-11	43.3	Myosin-1-like, N-terminal SH3 domain
`XP_057790720.1`	Pfam	`PF00063`	Myosin_head	Domain	191	851	6.2e-227	755.8	Myosin head (motor domain)
`XP_057790720.1`	Pfam	`PF00612`	IQ	Motif	892	908	4.4e-10	39.2	IQ calmodulin-binding motif
`XP_057790720.1`	Pfam	`PF00612`	IQ	Motif	929	945	4.4e-10	39.2	IQ calmodulin-binding motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934737.1
TTCAAAACACCTTATTTTCTTACAAGATTCAACGGTCTTAATTTAAATTTTGGGCAAATGGAAAATACTTATTTTCAGAAATCCCACGTTTACTTGAATCTAATCTAGAACTCTGCCCAATTCATGAAAACTCCTAACTGCTAATTTCAGATAATTATCAGTTTCTCGGTGTTCGAAATTAACGTCTTTCTCTCTCTCCGAGATTAGTGAGGCGAAATCTCCAAGTCTGGCATCTTCATTAGACTTCGCTTTCACGATGG...

CDS

1 records

下载 CDS FASTA

LOC131007822
ATGCTGTCTTTATCGACAGCTCGGAGCTCCTTGGAGGAAATGCTGGAGTCTCTCCGGCGAGAAGAAGAGACCCAGACGCCGAGGGACTTGCCGCCGGCGCTGCCTCCGAGGCCAAAGGCGACATCTCGTGCGCGCCTGCCGTCGGCCAAGAGGCCGTTGCCTATGAGCTCGTCGAGTTGTGTTCTGAATAAGGAAGAAAGGCAAGGACAGAGAGGGAATTATTTTGGGGCTAAAAAAGTTGAGGAAATGGAAGATGTAGA...

Protein

1 records

下载 Protein FASTA

XP_057790720.1
MLSLSTARSSLEEMLESLRREEETQTPRDLPPALPPRPKATSRARLPSAKRPLPMSSSSCVLNKEERQGQRGNYFGAKKVEEMEDVESLCVAAADENEGNQMLEEKGNGKLGHVAPGSVSSFRELAADDDMGRPMKKKLRVWCRRHDDLWESGQIRSNSGETASVLLSDGSVATVPTQDLLPANPHILDEVDDLGQLSYLNEPSVLHNLQYRYSQDNIYSKAGPVLLAVNPFKNVQLYGDDIVTAYRKKLLDSPHVYAIA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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