当前解析结果
SmilChr02G000399| 统一新 Gene ID | SmilChr02G000399 |
|---|---|
| 名称 | SmilChr02G000399 |
| 描述 | uncharacterized SmilChr02G000399 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 4934718 - 4938827 / + |
| NCBI Gene ID | LOC131007881 |
|---|---|
| GeneID | 131007881 |
| locus_tag | - |
| NCBI Name | LOC131007881 |
| 原始查询 | LOC131007881 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os08g0202300- identity=29.8; qcov=0.277; evalue=4.36e-50; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF29688 (TnsB_C); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007881 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790776.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057790776.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057790776.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790776.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790776.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:4934754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B11,C42 |
Chr2:4934761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr2:4934775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:4934779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr2:4934792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B140,B24,C23 |
Chr2:4934796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr2:4934802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C74,C83 |
Chr2:4934804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr2:4934809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B61,C10,C7 |
Chr2:4934813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr2:4934816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790776.1PF00078
RVT_1 448-595 aa
PF17919
RT_RNaseH_2 650-748 aa
PF17917
RT_RNaseH 678-777 aa
PF13456
RVT_3 812-931 aa
PF17921
Integrase_H2C2 1020-1071 aa
PF00665
rve 1086-1184 aa
PF29688
TnsB_C 1146-1205 aa
PF31073
DUF8803 1309-1368 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790776.1 |
Pfam | PF00078 |
RVT_1 | Domain | 448 | 595 | 2.3e-29 | 103.4 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057790776.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 650 | 748 | 3.6e-19 | 69.4 | RNase H-like domain found in reverse transcriptase |
XP_057790776.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 678 | 777 | 3.2e-12 | 47.2 | RNase H-like domain found in reverse transcriptase |
XP_057790776.1 |
Pfam | PF13456 |
RVT_3 | Domain | 812 | 931 | 1e-16 | 61.7 | Reverse transcriptase-like |
XP_057790776.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1020 | 1071 | 1.8e-09 | 38.3 | Integrase zinc binding domain |
XP_057790776.1 |
Pfam | PF00665 |
rve | Domain | 1086 | 1184 | 1.2e-18 | 68.0 | Integrase core domain |
XP_057790776.1 |
Pfam | PF29688 |
TnsB_C | Domain | 1146 | 1205 | 8.8e-10 | 39.3 | TnsB C-terminal domain |
XP_057790776.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1309 | 1368 | 7.6e-23 | 80.8 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。