当前解析结果
SmilChr02G000443| 统一新 Gene ID | SmilChr02G000443 |
|---|---|
| 名称 | SmilChr02G000443 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 5766958 - 5768426 / - |
| NCBI Gene ID | LOC131007896 |
|---|---|
| GeneID | 131007896 |
| locus_tag | - |
| NCBI Name | LOC131007896 |
| 原始查询 | LOC131007896 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=24.8; qcov=1.02; evalue=7.68e-33; confidence=weak |
| Rice | Os06g0166100- identity=30.8; qcov=0.976; evalue=9.63e-44; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007896 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057790790.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057790790.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057790790.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790790.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790790.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:5767146 |
T |
TAC |
2bp_insertion | frameshift_variant | 4 | B15,C25,C27,D1 |
Chr2:5767146 |
T |
TAC |
2bp_insertion | CDS_variant | 4 | B15,C25,C27,D1 |
Chr2:5767431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,A24,C40 |
Chr2:5767456 |
CT |
C |
1bp_deletion | frameshift_variant | 6 | A22,A24,B106,B83,C16,C40 |
Chr2:5767505 |
AC |
A |
1bp_deletion | frameshift_variant | 37 | A23,A3,A8,B106,B107,B109,B119,B128,B134,B135,B139,B20,B21,B31,B32,B44,B67,B72,B78,B83,B99,C16,C27,C29,C35,C36,C40,C43,C49,C51,C53,C63,C7,C74,C84,C85,D7 |
Chr2:5767536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B132,C65 |
Chr2:5767589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B132,C65 |
Chr2:5767737 |
GCA |
G |
2bp_deletion | frameshift_variant | 7 | B1,B4,B65,B66,B90,B93,C26 |
Chr2:5767816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,C65 |
Chr2:5767817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr2:5767864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B4,D11,D4 |
Chr2:5767876 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B102 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。