当前解析结果
SmilChr02G000550| 统一新 Gene ID | SmilChr02G000550 |
|---|---|
| 名称 | SmilChr02G000550 |
| 描述 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 7684412 - 7685293 / + |
| NCBI Gene ID | LOC131007935 |
|---|---|
| GeneID | 131007935 |
| locus_tag | - |
| NCBI Name | LOC131007935 |
| 原始查询 | LOC131007935 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 |
| 产物 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=36.6; qcov=0.952; evalue=2.52e-49; confidence=medium |
| Rice | Os11g0490200- identity=38.6; qcov=0.973; evalue=1.87e-54; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007935 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790829.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790829.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790829.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790829.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790829.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:7684525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B81,C16,C17,C67 |
Chr2:7684609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C16,C28 |
Chr2:7684681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B112,B120,B78,C84 |
Chr2:7684697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B112,B120,B78,C84 |
Chr2:7684699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B112,B78,C84 |
Chr2:7684702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B112,B120,B78,C84 |
Chr2:7684709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B112,B78,C84 |
Chr2:7684745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B45,C46 |
Chr2:7684762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:7684870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,B78 |
Chr2:7684879 |
A |
ACG |
2bp_insertion | frameshift_variant | 2 | B125,B78 |
Chr2:7684879 |
A |
ACG |
2bp_insertion | CDS_variant | 2 | B125,B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790829.1PF08263
LRRNT_2 33-73 aa
PF13855
LRR_8 128-185 aa
PF00560
LRR_1 150-172 aa
PF00560
LRR_1 174-195 aa
PF13855
LRR_8 197-259 aa
PF00560
LRR_1 198-219 aa
PF00560
LRR_1 248-270 aa
PF00560
LRR_1 272-288 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790829.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 33 | 73 | 6.4e-10 | 39.9 | Leucine rich repeat N-terminal domain |
XP_057790829.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 128 | 185 | 1e-19 | 70.7 | Leucine rich repeat |
XP_057790829.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 150 | 172 | 1.8e-25 | 84.2 | Leucine Rich Repeat |
XP_057790829.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 174 | 195 | 1.8e-25 | 84.2 | Leucine Rich Repeat |
XP_057790829.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 197 | 259 | 1e-19 | 70.7 | Leucine rich repeat |
XP_057790829.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 198 | 219 | 1.8e-25 | 84.2 | Leucine Rich Repeat |
XP_057790829.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 248 | 270 | 1.8e-25 | 84.2 | Leucine Rich Repeat |
XP_057790829.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 272 | 288 | 1.8e-25 | 84.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。