Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000609`

染色体: Chr02 坐标: 8894032-8900571 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000609`
名称	SmilChr02G000609
描述	uncharacterized SmilChr02G000609
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	8894032 - 8900571 / `+`

ID 对照

NCBI Gene ID	`LOC131007963`
GeneID	`131007963`
locus_tag	`-`
NCBI Name	`LOC131007963`
原始查询	`LOC131007963`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Modifier of rudimentary (Mod(r)) protein [Source:NCBI gene (formerly Entrezgene);Acc:818240]; symbol=AT2G36680; hit=AT2G36680; species=arabidopsis; confidence=medium
产物	Modifier of rudimentary (Mod(r)) protein [Source:NCBI gene (formerly Entrezgene);Acc:818240]; symbol=AT2G36680; hit=AT2G36680; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G36680` (AT2G36680) Modifier of rudimentary (Mod(r)) protein [Source:NCBI gene (formerly Entrezgene);Acc:818240] identity=56.5; qcov=0.468; evalue=3.67e-73; confidence=medium
Rice	`Os03g0572300` - identity=50.5; qcov=0.45; evalue=7.73e-57; confidence=medium
GO	GO:0000813 (ESCRT I complex); GO:0006612 (protein targeting to membrane); GO:0006623 (protein targeting to vacuole); GO:0043162 (ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway)
KEGG	-
Pfam	PF07200 (Mod_r)
InterPro	-
eggNOG	-
NR	GeneID:131007963

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057790853.1`
2	Cytosol	细胞质基质	0.60000	`XP_057790853.1`
3	Nucleus	细胞核	0.40000	`XP_057790853.1`
4	Chromosome	染色体	0.00000	`XP_057790853.1`
5	Centromere	着丝粒	0.00000	`XP_057790853.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:8894089`	`TC`	`T`	1bp_deletion	frameshift_variant	8	A25,B1,B49,B50,B69,B75,C16,C61
`Chr2:8894106`	`C`	`CA`	1bp_insertion	frameshift_variant	1	D6
`Chr2:8894106`	`C`	`CA`	1bp_insertion	CDS_variant	1	D6
`Chr2:8894107`	`G`	`GA`	1bp_insertion	frameshift_variant	51	A13,A21,B101,B108,B112,B118,B121,B124,B131,B132,B134,B137,B14,B2,B27,B28,B3,B47,B50,B56,B58,B67,B74,B77,B78,B84,B94,B96,C10,C14,C23,C25,C26,C35,C36,C45,C5,C50,C51,C56,C62,C65,C76,C77,C8,C80,C85,D10,D4,D7,D8
`Chr2:8894125`	`C`	`T`	EMS_canonical_SNV	stop_gained	17	B108,B112,B121,B124,B132,B14,B50,B67,C10,C23,C35,C36,C45,C76,C80,D4,D8
`Chr2:8894147`	`C`	`CT`	1bp_insertion	frameshift_variant	58	A13,A21,B101,B108,B112,B118,B12,B121,B124,B131,B132,B134,B137,B14,B140,B15,B2,B27,B28,B3,B4,B47,B50,B56,B58,B59,B67,B74,B77,B78,B84,B94,B96,C10,C14,C23,C25,C26,C35,C36,C45,C5,C50,C51,C56,C62,C65,C76,C77,C8,C80,C85,D10,D3,D4,D6,D7,D8
`Chr2:8894257`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	A25,B1,B50,B89,C45,C55,C81
`Chr2:8894270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,B1,B50,C45,C55
`Chr2:8894275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B1,B50,C45,C55
`Chr2:8894339`	`AC`	`A`	1bp_deletion	frameshift_variant	5	B110,B38,C25,C26,C77
`Chr2:8894339`	`AC`	`A`	1bp_deletion	CDS_variant	5	B110,B38,C25,C26,C77
`Chr2:8894390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B15,B17,B80,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790853.1

462 aa

231

462

Mod_r

PF07200 Mod_r 255-390 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790853.1`	Pfam	`PF07200`	Mod_r	Domain	255	390	4.7e-32	111.7	Modifier of rudimentary (Mod(r)) protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934870.1
ATGAAAGTTTTCTTAAAAATCCCAGCTCACGAAGTTCTCCGATCGAAGATCCCAAAGTCTGGAAAACATAGGCTCGAAATTTTCTTCGATTTGCAGCTGATGTCTCTCTTTGAGTCGGCGGCTATCGTCGCCTCCCCTGTTATCTCTTACGAGATCATCCGCCCCTTCTTCATCACCGTGAATCACCGCGCAGCTCGTCGATGGTTTCACCACCGTGAACTACTACGAAGCTTGCAGGCGTTCGATTTAAAATTCTCCAT...

CDS

1 records

下载 CDS FASTA

LOC131007963
ATGAAAGTTTTCTTAAAAATCCCAGCTCACGAAGTTCTCCGATCGAAGATCCCAAAGTCTGGAAAACATAGGCTCGAAATTTTCTTCGATTTGCAGCTGATGTCTCTCTTTGAGTCGGCGGCTATCGTCGCCTCCCCTGTTATCTCTTACGAGATCATCCGCCCCTTCTTCATCACCGTGAATCACCGCGCAGCTCGTCGATGGTTTCACCACCGTGAACTACTACGAAGCTTGCAGGCGTTCGATTTAAAATTCTCCAT...

Protein

1 records

下载 Protein FASTA

XP_057790853.1
MKVFLKIPAHEVLRSKIPKSGKHRLEIFFDLQLMSLFESAAIVASPVISYEIIRPFFITVNHRAARRWFHHRELLRSLQAFDLKFSISAGSIRRDIQEIQKPNNRCTNSNRSSPFSITISNSDPIEAKLSLPFSKFDLSNLHRRLSAHHRSNRTTTTPGTCLQPLTPTTVALILQFSFTAYSRSSQEQQAQSRLHQISTDSWCSPSVVSSPSSSLPGAPGGSSSSVNMTRPTDRPNSLSNVSPVEAAGIIALLEGKSVDE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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