当前解析结果
SmilChr02G000711| 统一新 Gene ID | SmilChr02G000711 |
|---|---|
| 名称 | SmilChr02G000711 |
| 描述 | arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 11457772 - 11472778 / + |
| NCBI Gene ID | LOC131007992 |
|---|---|
| GeneID | 131007992 |
| locus_tag | - |
| NCBI Name | LOC131007992 |
| 原始查询 | LOC131007992 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like |
| 产物 | arogenate dehydratase/prephenate dehydratase 1%2C chloroplastic-like |
| Arabidopsis | AT1G11790 (ADT1)arogenate dehydratase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837725] identity=70.9; qcov=0.893; evalue=1.97e-69; confidence=high |
| Rice | Os03g0286200- identity=67.7; qcov=0.751; evalue=2.29e-58; confidence=high |
| GO | GO:0004664 (prephenate dehydratase activity); GO:0005737 (cytoplasm); GO:0009094 (L-phenylalanine biosynthetic process); GO:0009507 (chloroplast); GO:0047769 (arogenate dehydratase activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007992 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057790882.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057790882.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057790882.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790882.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790882.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:11457776 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B60,C3 |
Chr2:11457776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B60,C3 |
Chr2:11457790 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B119,B23,B40,C16,C4,C53,C70 |
Chr2:11457820 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | A11,A15,B119,B136,B47,B56,B83,B96,C23,C39,C65,C84 |
Chr2:11457850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:11457867 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | C61 |
Chr2:11457867 |
C |
CG |
1bp_insertion | CDS_variant | 1 | C61 |
Chr2:11457879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr2:11457882 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B95 |
Chr2:11457882 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B95 |
Chr2:11458501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:11458538 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | B128,B130,B7,C54,C57,C59 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。