Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000800`

染色体: Chr02 坐标: 13384507-13387621 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000800`
名称	SmilChr02G000800
描述	uncharacterized SmilChr02G000800
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	13384507 - 13387621 / `+`

ID 对照

NCBI Gene ID	`LOC131008019`
GeneID	`131008019`
locus_tag	`-`
NCBI Name	`LOC131008019`
原始查询	`LOC131008019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339]; symbol=AT1G48720; hit=AT1G48720; species=arabidopsis; confidence=weak
产物	Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339]; symbol=AT1G48720; hit=AT1G48720; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G48720` (AT1G48720) Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339] identity=67.4; qcov=0.252; evalue=3.93e-40; confidence=weak
Rice	`Os08g0125300` - identity=29.6; qcov=0.545; evalue=6.67e-25; confidence=low
GO	-
KEGG	-
Pfam	PF07727 (RVT_2); PF13961 (DUF4219); PF14223 (Retrotran_gag_2)
InterPro	-
eggNOG	-
NR	GeneID:131008019

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057790906.1`
2	Cytosol	细胞质基质	0.60000	`XP_057790906.1`
3	Nucleus	细胞核	0.40000	`XP_057790906.1`
4	Chromosome	染色体	0.00000	`XP_057790906.1`
5	Centromere	着丝粒	0.00000	`XP_057790906.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:13384899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B64,B69,B8,B9,C53
`Chr2:13384924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C18,C3
`Chr2:13384944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B106,B107,C36,C71
`Chr2:13384948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B10,C11,C53,C69
`Chr2:13384978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr2:13384983`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B89
`Chr2:13384983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr2:13384985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B43
`Chr2:13384993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B89,B96
`Chr2:13385003`	`TA`	`T`	1bp_deletion	frameshift_variant	3	B13,B89,B96
`Chr2:13385003`	`TA`	`T`	1bp_deletion	CDS_variant	3	B13,B89,B96
`Chr2:13385005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B10,C11,C53,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790906.1

365 aa

182

365

DUF4219

Retrotran_gag_2

RVT_2

PF13961 DUF4219 12-38 aa PF14223 Retrotran_gag_2 24-205 aa PF07727 RVT_2 319-365 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790906.1`	Pfam	`PF13961`	DUF4219	Domain	12	38	6.9e-10	39.1	Domain of unknown function (DUF4219)
`XP_057790906.1`	Pfam	`PF14223`	Retrotran_gag_2	Domain	24	205	3.3e-33	115.5	gag-polypeptide of LTR copia-type
`XP_057790906.1`	Pfam	`PF07727`	RVT_2	Domain	319	365	7.9e-11	42.7	Reverse transcriptase (RNA-dependent DNA polymerase)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934923.1
TAGAAATATCTAGAATCAAGATATTTTAAGAAGAAAAAGAAAGAAAGAAAAATATAGAGAATTCTAGAAAAAGTGACTAAGTGAAGATATTTTGTAATAGTAAAATAAGTATAAAAATCTAGATAGAAATCAAGAGAATTCTAGAATTCTCACTTGATTACTATATATATGTGGAGGTTGTATCAATTGTAGATAATGAAGTGAATTGAAGAAAAATTGTGTTAGTAAACAACAATCCTCCCACTCAAATTCCTAAGCAC...

CDS

1 records

下载 CDS FASTA

LOC131008019
ATGGCCAACCTACAATCGTTTCAAGTCCCCGTGCTCAACAAGAGCAACTTCGACAATTGGAGCATCAAGATGAAGGCACTATTAGGAGCCCATGACGTTTGGGAGATCGTGGAGAACGGCTACGAGGAGCCGCGGGACGAGGCCGCACTATCCCAACAACAAAAGGATAGATTGCGAGATGCGAGAAAGAGAGACAAGAAGGCTCTCTGTCTCATTTATCAAGCGCTAGGGGACGATGATTTCGAGAAAATCTCGAATGC...

Protein

1 records

下载 Protein FASTA

XP_057790906.1
MANLQSFQVPVLNKSNFDNWSIKMKALLGAHDVWEIVENGYEEPRDEAALSQQQKDRLRDARKRDKKALCLIYQALGDDDFEKISNASTAKEAWEKLQNTCKGAEQVKKVRLQTLRGEFESLHMKESELISDYFSRVLAVSNQMKRNGEKLEDVRIMEKILRSLTPRFEHIVITIEETKNLEEMTIDLLLGSLQAYEEKQKKKQEISEQLLKLQVSSKDKEESSSNSHGQYKGGRGQGQDRGRGRGRGRGRRRGRGGFVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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