当前解析结果
SmilChr02G000885| 统一新 Gene ID | SmilChr02G000885 |
|---|---|
| 名称 | SmilChr02G000885 |
| 描述 | uncharacterized SmilChr02G000885 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 15256490 - 15257502 / - |
| NCBI Gene ID | LOC131008043 |
|---|---|
| GeneID | 131008043 |
| locus_tag | - |
| NCBI Name | LOC131008043 |
| 原始查询 | LOC131008043 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low |
| 产物 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=35.9; qcov=0.327; evalue=4.5e-09; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008043 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057790928.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057790928.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057790928.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790928.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790928.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:15256490 |
T |
TC |
1bp_insertion | frameshift_variant | 20 | A22,B100,B12,B2,B32,B37,B56,B6,B64,B75,B96,C22,C27,C32,C43,C63,C68,C74,C83,C87 |
Chr2:15256508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C22,C67,C75,C87 |
Chr2:15256515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C22,C67,C75,C79,C87 |
Chr2:15256523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B32,B75,C22,C87 |
Chr2:15256543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B83 |
Chr2:15256568 |
AG |
A |
1bp_deletion | frameshift_variant | 39 | A11,A21,A22,A3,B102,B106,B109,B110,B117,B130,B139,B14,B18,B21,B34,B42,B50,B53,B55,B6,B61,B63,B66,B67,B73,B76,B83,B86,B87,B91,B95,C31,C53,C55,C57,C63,C71,C76,C82 |
Chr2:15256571 |
C |
CT |
1bp_insertion | frameshift_variant | 40 | A11,A21,A22,A3,B102,B106,B109,B110,B117,B130,B139,B14,B18,B21,B34,B42,B50,B53,B55,B6,B61,B63,B66,B67,B73,B76,B83,B86,B87,B91,B95,C27,C31,C53,C55,C57,C63,C71,C76,C82 |
Chr2:15256592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr2:15256595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B62,C66 |
Chr2:15256598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B62,C66 |
Chr2:15256614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,C66,C87 |
Chr2:15256623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,C22,C66 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。