Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000927`

染色体: Chr02 坐标: 16127729-16130187 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000927`
名称	SmilChr02G000927
描述	uncharacterized SmilChr02G000927
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	16127729 - 16130187 / `-`

ID 对照

NCBI Gene ID	`LOC131008058`
GeneID	`131008058`
locus_tag	`-`
NCBI Name	`LOC131008058`
原始查询	`LOC131008058`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814794]; symbol=AT2G02650; hit=AT2G02650; species=arabidopsis; confidence=weak
产物	Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814794]; symbol=AT2G02650; hit=AT2G02650; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G02650` (AT2G02650) Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814794] identity=23.9; qcov=0.979; evalue=1.81e-16; confidence=weak
Rice	`Os01g0967700` - identity=31.7; qcov=0.412; evalue=9.45e-12; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity)
KEGG	-
Pfam	PF13456 (RVT_3); PF13966 (zf-RVT)
InterPro	-
eggNOG	-
NR	GeneID:131008058

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057790943.1`
2	Cytoplasm	细胞质	0.60000	`XP_057790943.1`
3	Nucleus	细胞核	0.20000	`XP_057790943.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057790943.1`
5	Chromosome	染色体	0.00000	`XP_057790943.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:16127733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B49,C45
`Chr2:16127736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B8,C63,C83
`Chr2:16127754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr2:16129593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:16129597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:16129613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:16129617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:16129683`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	B12,B48,B99,C53,C54,C62,C70
`Chr2:16129690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr2:16129870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,B67
`Chr2:16130089`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,D2
`Chr2:16130133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790943.1

291 aa

146

291

zf-RVT

RVT_3

PF13966 zf-RVT 24-117 aa PF13456 RVT_3 189-284 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790943.1`	Pfam	`PF13966`	zf-RVT	Domain	24	117	1.1e-17	65.2	zinc-binding in reverse transcriptase
`XP_057790943.1`	Pfam	`PF13456`	RVT_3	Domain	189	284	2.9e-10	40.8	Reverse transcriptase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934960.1
ATGGCGCAGCTTCGGAGTAATCTTAATAATAGAGATAAGCCGTTTTGGCCTGGGGAAAAACTGAATATGTACACAGTGAAATCTAGATACAAGCTTGCGATGAAAATTCGTCAAAGAAATGAAGCATCCACTTCCTCGGAAGGGAGTGTTTTATGGAACTGGATTTGGGGTTTAGATGTGATCCCTAAGGTTAAACTTTTTATGTGGAAATGTTTAGCTAATGCAATCCCGACGGCTATGGCGCTGCGGAGACGGAATGT...

CDS

1 records

下载 CDS FASTA

LOC131008058
ATGGCGCAGCTTCGGAGTAATCTTAATAATAGAGATAAGCCGTTTTGGCCTGGGGAAAAACTGAATATGTACACAGTGAAATCTAGATACAAGCTTGCGATGAAAATTCGTCAAAGAAATGAAGCATCCACTTCCTCGGAAGGGAGTGTTTTATGGAACTGGATTTGGGGTTTAGATGTGATCCCTAAGGTTAAACTTTTTATGTGGAAATGTTTAGCTAATGCAATCCCGACGGCTATGGCGCTGCGGAGACGGAATGT...

Protein

1 records

下载 Protein FASTA

XP_057790943.1
MAQLRSNLNNRDKPFWPGEKLNMYTVKSRYKLAMKIRQRNEASTSSEGSVLWNWIWGLDVIPKVKLFMWKCLANAIPTAMALRRRNVDIDPCCRRCGTHEETMEHVLRDCAWSEVLWRVSPLRLQPPNGDCSMMDWNLLIFQQKDISHLDCLAIASRALWSTPLRESLPNQLPLSVDFCRLGQLKASSDAALSVGKGFGIGVVLRDKDDDIKGCRFGFAFSVIEGEAIAMLECLRLCQERGVSDVIFETDSQLLYWLLIK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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