当前解析结果
SmilChr02G000990| 统一新 Gene ID | SmilChr02G000990 |
|---|---|
| 名称 | SmilChr02G000990 |
| 描述 | uncharacterized SmilChr02G000990 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 17418789 - 17419422 / - |
| NCBI Gene ID | LOC131008076 |
|---|---|
| GeneID | 131008076 |
| locus_tag | - |
| NCBI Name | LOC131008076 |
| 原始查询 | LOC131008076 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=29.1; qcov=0.984; evalue=6.14e-06; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008076 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790959.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057790959.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057790959.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057790959.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057790959.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:17418830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B135,B95,C67 |
Chr2:17418846 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B70,C78 |
Chr2:17418846 |
T |
TA |
1bp_insertion | CDS_variant | 2 | B70,C78 |
Chr2:17418858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B20,B28,B72,B83,C87 |
Chr2:17418877 |
A |
AT |
1bp_insertion | frameshift_variant | 13 | B1,B135,B140,B55,B67,B89,B95,C1,C43,C52,C67,C86,D11 |
Chr2:17418898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr2:17418900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B20,B46,B53,C33 |
Chr2:17418908 |
G |
A |
EMS_canonical_SNV | stop_gained | 35 | A19,A4,A7,B102,B112,B16,B18,B30,B36,B48,B49,B62,B7,B77,B84,B88,B99,C16,C34,C39,C40,C53,C56,C62,C64,C66,C68,C70,C72,C78,C86,D2,D4,D6,D7 |
Chr2:17418918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:17419071 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr2:17419078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C13 |
Chr2:17419081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C2,C56 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。