Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000990

染色体: Chr02 坐标: 17418789-17419422 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000990
名称SmilChr02G000990
描述uncharacterized SmilChr02G000990
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向17418789 - 17419422 / -

ID 对照

NCBI Gene IDLOC131008076
GeneID131008076
locus_tag-
NCBI NameLOC131008076
原始查询LOC131008076

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low
产物DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low
ArabidopsisAT3G47680 (AT3G47680)
DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]
identity=29.1; qcov=0.984; evalue=6.14e-06; confidence=low
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131008076

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057790959.1
2 Chromosome 染色体 0.00000 XP_057790959.1
3 Centromere 着丝粒 0.00000 XP_057790959.1
4 Chromatin 染色质 0.00000 XP_057790959.1
5 Telomere 端粒 0.00000 XP_057790959.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:17418830 C T EMS_canonical_SNV CDS_variant 4 B1,B135,B95,C67
Chr2:17418846 T TA 1bp_insertion frameshift_variant 2 B70,C78
Chr2:17418846 T TA 1bp_insertion CDS_variant 2 B70,C78
Chr2:17418858 C T EMS_canonical_SNV CDS_variant 5 B20,B28,B72,B83,C87
Chr2:17418877 A AT 1bp_insertion frameshift_variant 13 B1,B135,B140,B55,B67,B89,B95,C1,C43,C52,C67,C86,D11
Chr2:17418898 G A EMS_canonical_SNV CDS_variant 1 D5
Chr2:17418900 G A EMS_canonical_SNV CDS_variant 5 B102,B20,B46,B53,C33
Chr2:17418908 G A EMS_canonical_SNV stop_gained 35 A19,A4,A7,B102,B112,B16,B18,B30,B36,B48,B49,B62,B7,B77,B84,B88,B99,C16,C34,C39,C40,C53,C56,C62,C64,C66,C68,C70,C72,C78,C86,D2,D4,D6,D7
Chr2:17418918 G A EMS_canonical_SNV CDS_variant 1 B107
Chr2:17419071 G A EMS_canonical_SNV CDS_variant 1 C64
Chr2:17419078 G A EMS_canonical_SNV CDS_variant 2 B26,C13
Chr2:17419081 G A EMS_canonical_SNV CDS_variant 2 C2,C56

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057934976.1
ATGAAAGGTCGCTGGAAACGTCTTAACGAAAATGGAAACAAATGGGTTGCTGCTTGCAGGGAAGCAAATGCTCGAAGAAGGAGTGGCATGAGCGACAACGATGTTGAGAAAGAAGCTCATTCCATTTACGAAGCAGGTGGAAATAAGTTTCTAGATTTGGAAAGTGGTGGCAGTTCGAAAAGATCAAAGACTTCGGAAGATGGGGGATTTTCTATCCCTTCTAATCTAGAAACTCCAACATCTGAACAGTCAACTGCGAC...

CDS

1 records

下载 CDS FASTA
LOC131008076
ATGAAAGGTCGCTGGAAACGTCTTAACGAAAATGGAAACAAATGGGTTGCTGCTTGCAGGGAAGCAAATGCTCGAAGAAGGAGTGGCATGAGCGACAACGATGTTGAGAAAGAAGCTCATTCCATTTACGAAGCAGGTGGAAATAAGTTTCTAGATTTGGAAAGTGGTGGCAGTTCGAAAAGATCAAAGACTTCGGAAGATGGGGGATTTTCTATCCCTTCTAATCTAGAAACTCCAACATCTGAACAGTCAACTGCGAC...

Protein

1 records

下载 Protein FASTA
XP_057790959.1
MKGRWKRLNENGNKWVAACREANARRRSGMSDNDVEKEAHSIYEAGGNKFLDLESGGSSKRSKTSEDGGFSIPSNLETPTSEQSTATRPIGRDKAKRKGKGKVSQSESTHESAVAAELHAMRLIRDAEAELIKTRIELEREKLQRNAMKMKEKMLLQLLAKDHLSPEDEEMKRQLTKIVFGE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器