当前解析结果
SmilChr02G001125| 统一新 Gene ID | SmilChr02G001125 |
|---|---|
| 名称 | SmilChr02G001125 |
| 描述 | endoglucanase 5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 20402546 - 20405128 / + |
| NCBI Gene ID | LOC131008113 |
|---|---|
| GeneID | 131008113 |
| locus_tag | - |
| NCBI Name | LOC131008113 |
| 原始查询 | LOC131008113 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | endoglucanase 5-like |
| 产物 | endoglucanase 5-like |
| Arabidopsis | AT2G32990 (GH9B8)glycosyl hydrolase 9B8 [Source:NCBI gene (formerly Entrezgene);Acc:817861] identity=67.5; qcov=0.903; evalue=7.88e-139; confidence=high |
| Rice | Os02g0151300 (OsGH9B7)- identity=70.6; qcov=0.903; evalue=1.52e-137; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF00759 (Glyco_hydro_9) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008113 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057790994.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057790994.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057790994.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790994.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790994.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:20402713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
Chr2:20402947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C55 |
Chr2:20403115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,B136,B55 |
Chr2:20403145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B9,C26 |
Chr2:20403151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr2:20403199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr2:20403247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B137 |
Chr2:20403280 |
A |
AAT |
2bp_insertion | frameshift_variant | 2 | C17,C9 |
Chr2:20403280 |
A |
AAT |
2bp_insertion | CDS_variant | 2 | C17,C9 |
Chr2:20403355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B19,B37,B6,C63 |
Chr2:20403363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr2:20403412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790994.1PF00759
Glyco_hydro_9 25-203 aa
PF00759
Glyco_hydro_9 225-310 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790994.1 |
Pfam | PF00759 |
Glyco_hydro_9 | Repeat | 25 | 203 | 2e-100 | 337.8 | Glycosyl hydrolase family 9 |
XP_057790994.1 |
Pfam | PF00759 |
Glyco_hydro_9 | Repeat | 225 | 310 | 2e-100 | 337.8 | Glycosyl hydrolase family 9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。