当前解析结果
SmilChr02G001150| 统一新 Gene ID | SmilChr02G001150 |
|---|---|
| 名称 | SmilChr02G001150 |
| 描述 | DUF724 domain-containing protein 6-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 20959607 - 20961547 / + |
| NCBI Gene ID | LOC131008119 |
|---|---|
| GeneID | 131008119 |
| locus_tag | - |
| NCBI Name | LOC131008119 |
| 原始查询 | LOC131008119 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DUF724 domain-containing protein 6-like |
| 产物 | DUF724 domain-containing protein 6-like |
| Arabidopsis | AT1G11420 (DUF2)at domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) [Source:NCBI gene (formerly Entrezgene);Acc:837684] identity=26.4; qcov=0.902; evalue=1.22e-40; confidence=low |
| Rice | Os11g0552100- identity=32.4; qcov=0.229; evalue=4.49e-21; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF05266 (DUF724); PF05641 (Agenet) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008119 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791000.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791000.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791000.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791000.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791000.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:20959783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,C9,D3 |
Chr2:20959928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:20960057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,C2 |
Chr2:20960245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,D3 |
Chr2:20960259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr2:20960562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B71,B95,C14,C62 |
Chr2:20960643 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:20960921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B53,B71,C20 |
Chr2:20961082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B29,B9,B97,C26 |
Chr2:20961136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr2:20961182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C2 |
Chr2:20961217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791000.1PF05641
Agenet 23-94 aa
PF05641
Agenet 179-230 aa
PF05266
DUF724 458-633 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791000.1 |
Pfam | PF05641 |
Agenet | Domain | 23 | 94 | 2.6e-26 | 92.6 | Agenet domain |
XP_057791000.1 |
Pfam | PF05641 |
Agenet | Domain | 179 | 230 | 2.6e-26 | 92.6 | Agenet domain |
XP_057791000.1 |
Pfam | PF05266 |
DUF724 | Family | 458 | 633 | 9.4e-46 | 156.8 | Protein of unknown function (DUF724) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。