当前解析结果
SmilChr02G001156| 统一新 Gene ID | SmilChr02G001156 |
|---|---|
| 名称 | SmilChr02G001156 |
| 描述 | uncharacterized SmilChr02G001156 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 21105216 - 21109494 / - |
| NCBI Gene ID | LOC131008121 |
|---|---|
| GeneID | 131008121 |
| locus_tag | - |
| NCBI Name | LOC131008121 |
| 原始查询 | LOC131008121 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=25.9; qcov=0.549; evalue=2.48e-12; confidence=low |
| Rice | Os06g0484800- identity=25.3; qcov=0.6; evalue=4.17e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008121 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791002.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057791002.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057791002.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791002.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791002.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:21105351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr2:21105496 |
TCC |
* |
2bp_deletion | CDS_variant | 5 | B101,B104,B82,C45,D3 |
Chr2:21105524 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | A9 |
Chr2:21105524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr2:21105549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr2:21105555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr2:21105586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,B93 |
Chr2:21105600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr2:21105642 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B2,B41,D9 |
Chr2:21105642 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B2,B41,D9 |
Chr2:21105649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B41,B6,B71,D9 |
Chr2:21105650 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。