当前解析结果
SmilChr02G001197| 统一新 Gene ID | SmilChr02G001197 |
|---|---|
| 名称 | SmilChr02G001197 |
| 描述 | uncharacterized SmilChr02G001197 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 22016943 - 22017401 / + |
| NCBI Gene ID | LOC131008134 |
|---|---|
| GeneID | 131008134 |
| locus_tag | - |
| NCBI Name | LOC131008134 |
| 原始查询 | LOC131008134 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0630250; species=rice; confidence=low |
| 产物 | hit=Os02g0630250; species=rice; confidence=low |
| Arabidopsis | AT5G42905 (AT5G42905)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834302] identity=36.4; qcov=0.651; evalue=6.49e-06; confidence=low |
| Rice | Os02g0630250- identity=31.1; qcov=0.803; evalue=1.79e-09; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008134 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791012.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791012.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057791012.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791012.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791012.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:22016987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B117,C16,C61 |
Chr2:22016989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B121,B89,C80 |
Chr2:22017005 |
T |
TTG |
2bp_insertion | frameshift_variant | 112 | A11,A14,A16,A19,A2,A21,A25,A4,A8,A9,B10,B106,B107,B11,B110,B111,B114,B117,B119,B12,B120,B123,B128,B129,B13,B131,B132,B133,B134,B135,B138,B16,B18,B25,B27,B30,B32,B36,B37,B39,B41,B42,B43,B45,B48,B49,B5,B53,B55,B56,B57,B61,B62,B64,B67,B68,B73,B75,B76,B81,B82,B83,B84,B88,B89,B9,B91,B94,B95,B96,B99,C10,C13,C16,C19,C20,C26,C29,C30,C34,C36,C38,C39,C41,C43,C45,C46,C47,C51,C53,C54,C56,C59,C61,C63,C64,C66,C70,C72,C74,C76,C77,C81,C82,C85,D1,D10,D11,D4,D6,D7,D9 |
Chr2:22017008 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A11,B78,C54 |
Chr2:22017008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B78,C54 |
Chr2:22017015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:22017025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:22017048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:22017049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B117,C16,C61 |
Chr2:22017064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:22017068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:22017075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791012.1PF13456
RVT_3 2-119 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791012.1 |
Pfam | PF13456 |
RVT_3 | Domain | 2 | 119 | 2.2e-14 | 54.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。