当前解析结果
SmilChr02G001223| 统一新 Gene ID | SmilChr02G001223 |
|---|---|
| 名称 | SmilChr02G001223 |
| 描述 | uncharacterized SmilChr02G001223 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 22480981 - 22489772 / - |
| NCBI Gene ID | LOC131008141 |
|---|---|
| GeneID | 131008141 |
| locus_tag | - |
| NCBI Name | LOC131008141 |
| 原始查询 | LOC131008141 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P0410E01.34-1; symbol=P0410E01.34-1; hit=Os01g0613900; species=rice; confidence=medium |
| 产物 | P0410E01.34-1; symbol=P0410E01.34-1; hit=Os01g0613900; species=rice; confidence=medium |
| Arabidopsis | AT2G34090 (MEE18)maternal effect embryo arrest 18 [Source:NCBI gene (formerly Entrezgene);Acc:817970] identity=52.5; qcov=0.625; evalue=6.56e-38; confidence=medium |
| Rice | Os01g0613900 (P0410E01.34-1)- identity=53.3; qcov=0.652; evalue=4.6e-42; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008141 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791018.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791018.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057791018.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791018.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791018.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:22481137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr2:22481142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B46 |
Chr2:22481487 |
TA |
T |
1bp_deletion | frameshift_variant | 20 | A13,A18,A22,B1,B110,B120,B122,B22,B25,B26,B74,B95,C13,C18,C2,C28,C35,C48,D2,D5 |
Chr2:22481801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B24,B66,B8,C39 |
Chr2:22481824 |
AC |
A |
1bp_deletion | frameshift_variant | 52 | A10,A13,A16,B10,B104,B12,B120,B123,B130,B131,B133,B135,B137,B2,B25,B27,B29,B30,B32,B33,B38,B39,B44,B51,B53,B55,B64,B78,B91,C2,C29,C31,C32,C35,C4,C46,C49,C55,C57,C59,C6,C62,C63,C64,C66,C68,C73,C78,C8,D3,D4,D9 |
Chr2:22482528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr2:22482594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B25,B88 |
Chr2:22483265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B107,B5,B62,C60 |
Chr2:22483332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B107,B62,C60 |
Chr2:22483353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr2:22483362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:22483366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B25,B88 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。