当前解析结果
SmilChr02G001350| 统一新 Gene ID | SmilChr02G001350 |
|---|---|
| 名称 | SmilChr02G001350 |
| 描述 | uncharacterized SmilChr02G001350 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 25269118 - 25270356 / - |
| NCBI Gene ID | LOC131008184 |
|---|---|
| GeneID | 131008184 |
| locus_tag | - |
| NCBI Name | LOC131008184 |
| 原始查询 | LOC131008184 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=27.9; qcov=0.4; evalue=7.55e-20; confidence=low |
| Rice | Os12g0156200- identity=20.4; qcov=0.405; evalue=3.2e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008184 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791060.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057791060.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057791060.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057791060.1 |
| 5 | Cytosol | 细胞质基质 | 0.40000 | XP_057791060.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:25269118 |
C |
CTG |
2bp_insertion | frameshift_variant | 62 | A10,A6,B10,B100,B101,B104,B113,B120,B126,B130,B132,B133,B135,B15,B16,B22,B3,B36,B39,B42,B43,B45,B51,B56,B58,B60,B62,B63,B64,B66,B67,B78,B79,B8,B81,B83,B89,B92,C10,C11,C16,C18,C19,C21,C24,C25,C28,C3,C35,C45,C48,C62,C63,C68,C69,C7,C73,C74,C79,D10,D5,D7 |
Chr2:25269124 |
TTG |
T |
2bp_deletion | frameshift_variant | 45 | A6,B10,B100,B104,B113,B120,B126,B130,B132,B135,B15,B22,B3,B36,B42,B43,B45,B51,B58,B60,B62,B63,B66,B67,B8,B83,B89,C10,C16,C18,C19,C25,C3,C35,C45,C48,C62,C68,C7,C73,C74,C79,D10,D5,D7 |
Chr2:25269140 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B68,B90,B92,B97 |
Chr2:25269142 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B31 |
Chr2:25269145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,B41 |
Chr2:25269147 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | B42,B90,B92,B97 |
Chr2:25269147 |
GT |
G |
1bp_deletion | CDS_variant | 4 | B42,B90,B92,B97 |
Chr2:25269164 |
C |
CT |
1bp_insertion | frameshift_variant | 112 | A11,A16,A18,A19,A2,A20,A21,A22,A25,A3,A4,A5,A7,A8,B103,B108,B11,B111,B112,B115,B118,B119,B12,B122,B128,B129,B131,B134,B135,B137,B138,B139,B18,B20,B22,B23,B28,B29,B30,B37,B4,B41,B44,B46,B48,B49,B5,B53,B54,B55,B57,B59,B60,B63,B64,B68,B69,B70,B71,B72,B74,B78,B79,B82,B84,B85,B88,B90,B91,B94,B98,B99,C1,C14,C15,C17,C20,C26,C27,C29,C30,C31,C37,C38,C39,C4,C40,C41,C44,C46,C47,C5,C51,C52,C53,C55,C58,C61,C62,C66,C7,C72,C77,C8,C80,C81,C85,C9,D11,D2,D4,D9 |
Chr2:25269166 |
TC |
T |
1bp_deletion | frameshift_variant | 105 | A11,A16,A18,A19,A20,A21,A22,A25,A5,A8,B103,B108,B11,B111,B112,B115,B118,B119,B121,B122,B128,B129,B131,B133,B134,B137,B138,B139,B18,B20,B23,B28,B29,B30,B33,B37,B4,B41,B44,B46,B48,B49,B5,B53,B54,B55,B57,B59,B60,B63,B64,B68,B69,B70,B71,B72,B74,B78,B79,B82,B84,B85,B88,B91,B94,B98,B99,C14,C15,C17,C20,C26,C27,C29,C30,C31,C37,C38,C39,C4,C40,C41,C44,C46,C47,C5,C51,C52,C53,C55,C58,C62,C66,C7,C72,C77,C8,C80,C81,C85,C9,D11,D2,D4,D9 |
Chr2:25269168 |
C |
CT |
1bp_insertion | frameshift_variant | 6 | A7,B121,B122,B31,B33,C4 |
Chr2:25269169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,A3,C61 |
Chr2:25269171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B80,C60,C87 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。