当前解析结果
SmilChr01G000282| 统一新 Gene ID | SmilChr01G000282 |
|---|---|
| 名称 | SmilChr01G000282 |
| 描述 | uncharacterized SmilChr01G000282 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 5531763 - 5533268 / - |
| NCBI Gene ID | LOC131008189 |
|---|---|
| GeneID | 131008189 |
| locus_tag | - |
| NCBI Name | LOC131008189 |
| 原始查询 | LOC131008189 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| 产物 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=27.9; qcov=0.758; evalue=2.87e-39; confidence=low |
| Rice | Os06g0484800- identity=26.8; qcov=0.804; evalue=4.63e-39; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008189 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791084.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057791084.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791084.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791084.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791084.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:5531769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B102,B12,B22,D7 |
Chr1:5531794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B24,C45 |
Chr1:5531795 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr1:5531804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,B60,B8,B85 |
Chr1:5531817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:5531818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B75,C73 |
Chr1:5531822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B52,B60,B8,B85 |
Chr1:5531823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr1:5531833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C18,C19,C82 |
Chr1:5531868 |
A |
AT |
1bp_insertion | frameshift_variant | 5 | B137,B43,B52,C77,D8 |
Chr1:5531868 |
A |
AT |
1bp_insertion | CDS_variant | 5 | B137,B43,B52,C77,D8 |
Chr1:5531872 |
C |
T |
EMS_canonical_SNV | stop_gained | 42 | A10,A14,A19,A3,A9,B1,B100,B108,B109,B11,B117,B123,B126,B137,B138,B20,B26,B28,B32,B37,B42,B46,B49,B61,B7,B81,B87,B89,B9,B90,C22,C23,C26,C34,C40,C49,C53,C57,C60,C70,C75,D4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。