Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001430`

染色体: Chr02 坐标: 27005555-27006632 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001430`
名称	SmilChr02G001430
描述	uncharacterized protein At2g29880-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27005555 - 27006632 / `-`

ID 对照

NCBI Gene ID	`LOC131008209`
GeneID	`131008209`
locus_tag	`-`
NCBI Name	`LOC131008209`
原始查询	`LOC131008209`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784]; symbol=AT5G27260; hit=AT5G27260; species=arabidopsis; confidence=low
产物	Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784]; symbol=AT5G27260; hit=AT5G27260; species=arabidopsis; confidence=low
Arabidopsis	`AT5G27260` (AT5G27260) Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784] identity=35; qcov=1; evalue=2.71e-55; confidence=low
Rice	`Os09g0122200` - identity=27.2; qcov=0.421; evalue=2.42e-06; confidence=low
GO	-
KEGG	-
Pfam	PF12776 (Myb_DNA-bind_3); PF24769 (At2g29880_C)
InterPro	-
eggNOG	-
NR	GeneID:131008209

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057791085.1`
2	Chromosome	染色体	0.00000	`XP_057791085.1`
3	Centromere	着丝粒	0.00000	`XP_057791085.1`
4	Chromatin	染色质	0.00000	`XP_057791085.1`
5	Telomere	端粒	0.00000	`XP_057791085.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27005641`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr2:27005655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C82
`Chr2:27005668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,B76
`Chr2:27005680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C72,D10
`Chr2:27005722`	`T`	`TC`	1bp_insertion	frameshift_variant	15	A10,A15,A2,B139,B27,B68,B7,B9,C27,C3,C41,C58,C73,D10,D3
`Chr2:27005723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C28,C36,D4
`Chr2:27005821`	`G`	`A`	EMS_canonical_SNV	stop_gained	12	A13,A9,B5,B88,C36,C5,C67,C76,C77,C8,D11,D2
`Chr2:27005826`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,B59
`Chr2:27005844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B103,B139,B86
`Chr2:27005880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C38
`Chr2:27005919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B61,C36
`Chr2:27005934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B122,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791085.1

323 aa

162

323

Myb_DNA-bind_3

At2g29880_C

PF12776 Myb_DNA-bind_3 18-114 aa PF24769 At2g29880_C 275-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791085.1`	Pfam	`PF12776`	Myb_DNA-bind_3	Domain	18	114	1.2e-15	59.0	Myb/SANT-like DNA-binding domain
`XP_057791085.1`	Pfam	`PF24769`	At2g29880_C	Domain	275	320	4.4e-17	62.9	At2g29880 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935102.1
TTCGGAGTTTAGTAATATTATTATGGGAGACTCTCAACCACAAGATTCCAAAAAAATGGCAGTGTATGAAGCATGGACGCAGGAACAAAGTGATGCCTTGCTACGAATTCTGGCTGAATCTGCAATTAGGGGATGGCGCGATAATAGTGGTATATTTAGCAAAGCAACAGTAGAGGAAAGGATATTGCCTGTTCTCAATGAAAAACTTAGGTCCAATAAAAATTATAATCATTACCAAAGTCGTATCAAATGGTTTAAGA...

CDS

1 records

下载 CDS FASTA

LOC131008209
ATGGGAGACTCTCAACCACAAGATTCCAAAAAAATGGCAGTGTATGAAGCATGGACGCAGGAACAAAGTGATGCCTTGCTACGAATTCTGGCTGAATCTGCAATTAGGGGATGGCGCGATAATAGTGGTATATTTAGCAAAGCAACAGTAGAGGAAAGGATATTGCCTGTTCTCAATGAAAAACTTAGGTCCAATAAAAATTATAATCATTACCAAAGTCGTATCAAATGGTTTAAGAGCCGTTGGAATGCGTATTCAAC...

Protein

1 records

下载 Protein FASTA

XP_057791085.1
MGDSQPQDSKKMAVYEAWTQEQSDALLRILAESAIRGWRDNSGIFSKATVEERILPVLNEKLRSNKNYNHYQSRIKWFKSRWNAYSTLLKFNSGFGYDNDTKKFTAPDEVWDVYIEAHPKDAYLRTGSFSDYDELRLAVGNGVAVGRNAIGVGSSTDARTIGVDESRGPLIEELNYDTATEAFVVLAEDDPPLSASKSPLEPTEVPVESTQRRAPAKRSRGQFETNSGHTENSSHQELMVEIKKVTSTMDRVESLFVKRD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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