当前解析结果
SmilChr02G001436| 统一新 Gene ID | SmilChr02G001436 |
|---|---|
| 名称 | SmilChr02G001436 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 27050512 - 27052404 / + |
| NCBI Gene ID | LOC131008210 |
|---|---|
| GeneID | 131008210 |
| locus_tag | - |
| NCBI Name | LOC131008210 |
| 原始查询 | LOC131008210 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=27.1; qcov=1; evalue=1.88e-44; confidence=low |
| Rice | Os07g0186500- identity=29.8; qcov=0.933; evalue=9.57e-58; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008210 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.40000 | XP_057791086.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057791086.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057791086.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057791086.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791086.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:27050520 |
GCC |
G |
2bp_deletion | frameshift_variant | 25 | A10,A4,A5,A8,B10,B110,B115,B119,B24,B27,B44,B50,B77,B79,C2,C41,C43,C52,C58,C60,C71,C75,C77,D1,D6 |
Chr2:27050569 |
T |
TCA |
2bp_insertion | frameshift_variant | 26 | A1,A10,A4,A8,B10,B110,B115,B119,B24,B27,B44,B50,B77,B79,C38,C41,C43,C50,C52,C58,C60,C71,C75,C77,D1,D6 |
Chr2:27050570 |
TTG |
T |
2bp_deletion | frameshift_variant | 26 | A1,A10,A4,A8,B10,B110,B115,B119,B24,B27,B44,B50,B77,B79,C38,C41,C43,C50,C52,C58,C60,C71,C75,C77,D1,D6 |
Chr2:27050723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr2:27050753 |
GT |
G |
1bp_deletion | frameshift_variant | 17 | B120,B125,B20,B26,B3,B69,B74,B84,B85,C33,C40,C42,C43,C46,C7,C84,C87 |
Chr2:27050759 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C45 |
Chr2:27050759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr2:27050821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B91 |
Chr2:27050888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:27050944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr2:27050982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:27050994 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791086.1PF00931
NB-ARC 8-94 aa
PF23559
WHD_DRP 169-239 aa
PF23598
LRR_14 298-583 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791086.1 |
Pfam | PF00931 |
NB-ARC | Domain | 8 | 94 | 9.9e-19 | 68.3 | NB-ARC domain |
XP_057791086.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 169 | 239 | 3.6e-18 | 66.1 | Disease resistance protein Winged helix domain |
XP_057791086.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 298 | 583 | 5.8e-19 | 68.8 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。