Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001495`

染色体: Chr02 坐标: 27892569-27896373 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001495`
名称	SmilChr02G001495
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27892569 - 27896373 / `-`

ID 对照

NCBI Gene ID	`LOC131008224`
GeneID	`131008224`
locus_tag	`-`
NCBI Name	`LOC131008224`
原始查询	`LOC131008224`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=44; qcov=0.626; evalue=2.18e-135; confidence=medium
Rice	`Os07g0550500` - identity=41.8; qcov=0.674; evalue=1.33e-127; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0008270 (zinc ion binding); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00098 (zf-CCHC); PF00954 (S_locus_glycop); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF14223 (Retrotran_gag_2)
InterPro	-
eggNOG	-
NR	GeneID:131008224

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791100.1`
2	Nucleus	细胞核	0.00000	`XP_057791100.1`
3	Chromosome	染色体	0.00000	`XP_057791100.1`
4	Centromere	着丝粒	0.00000	`XP_057791100.1`
5	Chromatin	染色质	0.00000	`XP_057791100.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27894298`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B129
`Chr2:27894298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr2:27894533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr2:27894610`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:27895006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C42,C82,D3
`Chr2:27895250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:27895686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr2:27895705`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C20,C85
`Chr2:27895734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791100.1

773 aa

386

773

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

Retrotran_gag_2

zf-CCHC

PF00954 S_locus_glycop 55-162 aa PF08276 PAN_2 184-251 aa PF00069 Pkinase 347-469 aa PF07714 PK_Tyr_Ser-Thr 349-469 aa PF14223 Retrotran_gag_2 533-705 aa PF00098 zf-CCHC 732-747 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791100.1`	Pfam	`PF00954`	S_locus_glycop	Domain	55	162	6.2e-22	79.0	S-locus glycoprotein domain
`XP_057791100.1`	Pfam	`PF08276`	PAN_2	Domain	184	251	4.6e-20	72.2	PAN-like domain
`XP_057791100.1`	Pfam	`PF00069`	Pkinase	Domain	347	469	7.1e-17	62.4	Protein kinase domain
`XP_057791100.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	349	469	1.5e-20	74.3	Protein tyrosine and serine/threonine kinase
`XP_057791100.1`	Pfam	`PF14223`	Retrotran_gag_2	Domain	533	705	9.6e-33	114.0	gag-polypeptide of LTR copia-type
`XP_057791100.1`	Pfam	`PF00098`	zf-CCHC	Domain	732	747	4.5e-05	24.1	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935117.1
CGAAGCTAGAGCCATATGCAGAGTCTTGCTTGGTATCATCTATAGATATACATTTGACCAGTTTGATTTAAATGAAATTCATTCTAATTGAGCTCCATTTAATTAGTTGCATATCTTCGTTTTCAAAAGATGAAGCATTTGATCTTCAACAAAATCCTGCGCATGTTGTTTGTATCCATAATCTTTCCACAACTCTCAGTTTCTGTAGATACACTCCTCCCAAATCAAACATTAGCCGTCGGGCAGAGTTTGGTGAGTCA...

CDS

1 records

下载 CDS FASTA

LOC131008224
ATGTTGCCCGGAATGAAGATCCTCGATGATCTTGATTCCGGTGTTGAGACGAACTTGACATCCTGGAGAAATTCGGATGATCCTTTGCCTGGAGAGTTTGTGTTCAAGATCATGAATCGTGGACTGCCTCAGATGGTGATTTGCAGAGGAGAGAGCATATTTTATCGAACTGGAATATGGAATGGGCTTCAGTTTAGCAGTATGCCATCTCTGTTGAATTCAGTTTTCCACCCTGATTTCAATATAAGCCATGGGAGGTT...

Protein

1 records

下载 Protein FASTA

XP_057791100.1
MLPGMKILDDLDSGVETNLTSWRNSDDPLPGEFVFKIMNRGLPQMVICRGESIFYRTGIWNGLQFSSMPSLLNSVFHPDFNISHGRLISVSKAYNSSLFTRMNLDASGLIQRYTMNSRRDMWNLAYKFQQDRCDEYGSCGAHAVCSIEKMQKCECLKGYEPTSPNDWDLQDWSRGCRRVKPLDCKGGGDGFHEVRGVNYPDMLQFWLNTSMSLEQCKAECLRNCNCSAYTNSDVTNGGSGCLMWLGDLVDIREVSEADSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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