当前解析结果
SmilChr02G001527| 统一新 Gene ID | SmilChr02G001527 |
|---|---|
| 名称 | SmilChr02G001527 |
| 描述 | uncharacterized SmilChr02G001527 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 28400899 - 28404000 / + |
| NCBI Gene ID | LOC131008236 |
|---|---|
| GeneID | 131008236 |
| locus_tag | - |
| NCBI Name | LOC131008236 |
| 原始查询 | LOC131008236 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | ATMG00750- identity=37.5; qcov=0.078; evalue=1.68e-07; confidence=weak |
| Rice | Os08g0202300- identity=35.3; qcov=0.259; evalue=6.51e-36; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008236 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791111.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057791111.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057791111.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791111.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791111.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:28400901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C16,C62,D3 |
Chr2:28400911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,C27 |
Chr2:28400939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B137,B73,C48 |
Chr2:28400942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,C27,C9 |
Chr2:28400955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:28400958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,B93 |
Chr2:28400971 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B99,C7,C82 |
Chr2:28400977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B110,B124,B16,B88,C67 |
Chr2:28400984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,B4,B67,C60 |
Chr2:28400989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,B4,B67,C60 |
Chr2:28401001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr2:28401002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791111.1PF00078
RVT_1 91-241 aa
PF17919
RT_RNaseH_2 243-340 aa
PF17917
RT_RNaseH 267-369 aa
PF13456
RVT_3 410-523 aa
PF17921
Integrase_H2C2 585-633 aa
PF31073
DUF8803 858-918 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791111.1 |
Pfam | PF00078 |
RVT_1 | Domain | 91 | 241 | 1.7e-30 | 107.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057791111.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 243 | 340 | 9.5e-17 | 61.6 | RNase H-like domain found in reverse transcriptase |
XP_057791111.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 267 | 369 | 1.2e-15 | 58.2 | RNase H-like domain found in reverse transcriptase |
XP_057791111.1 |
Pfam | PF13456 |
RVT_3 | Domain | 410 | 523 | 7.7e-15 | 55.6 | Reverse transcriptase-like |
XP_057791111.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 585 | 633 | 8.7e-12 | 45.7 | Integrase zinc binding domain |
XP_057791111.1 |
Pfam | PF31073 |
DUF8803 | Domain | 858 | 918 | 4.5e-22 | 78.4 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。