当前解析结果
SmilChr02G001612| 统一新 Gene ID | SmilChr02G001612 |
|---|---|
| 名称 | SmilChr02G001612 |
| 描述 | uncharacterized SmilChr02G001612 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 30009153 - 30013861 / - |
| NCBI Gene ID | LOC131008268 |
|---|---|
| GeneID | 131008268 |
| locus_tag | - |
| NCBI Name | LOC131008268 |
| 原始查询 | LOC131008268 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0523701; species=rice; confidence=low |
| 产物 | hit=Os06g0523701; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os06g0523701- identity=29.9; qcov=0.424; evalue=3.38e-14; confidence=low |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008268 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057791138.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057791138.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791138.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791138.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791138.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:30009186 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B6,C67 |
Chr2:30009186 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B6,C67 |
Chr2:30009198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr2:30009212 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C60 |
Chr2:30009227 |
G |
A |
EMS_canonical_SNV | stop_gained | 42 | A13,A2,A7,B100,B107,B108,B112,B117,B122,B13,B131,B19,B2,B20,B28,B29,B35,B54,B64,B72,B75,B77,B80,B93,B94,B97,C15,C16,C2,C23,C36,C47,C52,C60,C61,C72,C79,C81,C82,C85,C9,D3 |
Chr2:30009246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,C59 |
Chr2:30009254 |
G |
A |
EMS_canonical_SNV | stop_gained | 47 | A11,A13,A25,B10,B105,B106,B114,B119,B120,B123,B126,B129,B134,B24,B27,B45,B46,B47,B49,B50,B52,B60,B61,B63,B64,B73,B78,B79,B8,B81,B82,B83,B86,C15,C20,C29,C31,C35,C38,C39,C4,C47,C63,C75,C76,C86,D8 |
Chr2:30009264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B114 |
Chr2:30009327 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B13 |
Chr2:30009327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr2:30009341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:30009350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B78,B86,C75 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。