当前解析结果
SmilChr02G001663| 统一新 Gene ID | SmilChr02G001663 |
|---|---|
| 名称 | SmilChr02G001663 |
| 描述 | uncharacterized SmilChr02G001663 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 30853773 - 30857355 / + |
| NCBI Gene ID | LOC131008280 |
|---|---|
| GeneID | 131008280 |
| locus_tag | - |
| NCBI Name | LOC131008280 |
| 原始查询 | LOC131008280 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=medium |
| 产物 | hit=Os04g0191000; species=rice; confidence=medium |
| Arabidopsis | ATMG00860- identity=39.2; qcov=0.147; evalue=7.12e-28; confidence=weak |
| Rice | Os04g0191000- identity=40.8; qcov=0.536; evalue=1.42e-114; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF19259 (Ty3_capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008280 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791151.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057791151.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057791151.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057791151.1 |
| 5 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057791151.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:30853877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B60,B91,C64 |
Chr2:30853916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C61 |
Chr2:30853980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr2:30854063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B95 |
Chr2:30854253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr2:30854292 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A25,B34 |
Chr2:30854292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B34 |
Chr2:30855289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr2:30855350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr2:30855356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr2:30855375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B72,C10 |
Chr2:30855400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791151.1PF19259
Ty3_capsid 38-199 aa
PF03732
PEG10_N-capsid 39-117 aa
PF00098
zf-CCHC 298-314 aa
PF08284
RVP_2 373-426 aa
PF08284
RVP_2 431-464 aa
PF00078
RVT_1 564-721 aa
PF17919
RT_RNaseH_2 784-876 aa
PF17917
RT_RNaseH 811-908 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791151.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 38 | 199 | 1.7e-09 | 38.1 | Ty3 transposon capsid-like protein |
XP_057791151.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 39 | 117 | 2.4e-10 | 41.3 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057791151.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 298 | 314 | 1.1e-05 | 26.0 | Zinc knuckle |
XP_057791151.1 |
Pfam | PF08284 |
RVP_2 | Domain | 373 | 426 | 4.7e-17 | 62.8 | Retroviral aspartyl protease |
XP_057791151.1 |
Pfam | PF08284 |
RVP_2 | Domain | 431 | 464 | 4.7e-17 | 62.8 | Retroviral aspartyl protease |
XP_057791151.1 |
Pfam | PF00078 |
RVT_1 | Domain | 564 | 721 | 3.3e-37 | 129.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057791151.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 784 | 876 | 2.5e-32 | 111.6 | RNase H-like domain found in reverse transcriptase |
XP_057791151.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 811 | 908 | 2.9e-33 | 114.9 | RNase H-like domain found in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。