Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001674`

染色体: Chr02 坐标: 30995524-30998145 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001674`
名称	SmilChr02G001674
描述	uncharacterized SmilChr02G001674
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	30995524 - 30998145 / `-`

ID 对照

NCBI Gene ID	`LOC131008286`
GeneID	`131008286`
locus_tag	`-`
NCBI Name	`LOC131008286`
原始查询	`LOC131008286`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257]; symbol=AT4G21700; hit=AT4G21700; species=arabidopsis; confidence=low
产物	DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257]; symbol=AT4G21700; hit=AT4G21700; species=arabidopsis; confidence=low
Arabidopsis	`AT4G21700` (AT4G21700) DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257] identity=32.1; qcov=1.1; evalue=3.47e-128; confidence=low
Rice	`Os01g0678000` - identity=28.5; qcov=0.928; evalue=2.31e-64; confidence=low
GO	GO:0043231 (intracellular membrane-bounded organelle)
KEGG	-
Pfam	PF11145 (DUF2921); PF25333 (DUF2921_N)
InterPro	-
eggNOG	-
NR	GeneID:131008286

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057791157.1`
2	Vacuole	液泡	0.20000	`XP_057791157.1`
3	Nucleus	细胞核	0.00000	`XP_057791157.1`
4	Chromosome	染色体	0.00000	`XP_057791157.1`
5	Centromere	着丝粒	0.00000	`XP_057791157.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:30995548`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B53
`Chr2:30995548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr2:30995626`	`CAA`	`C`	2bp_deletion	frameshift_variant	22	A8,B1,B114,B119,B120,B123,B13,B134,B25,B27,B29,B38,B39,B68,B97,C13,C19,C38,C54,C59,C70,D9
`Chr2:30995892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C56,C65
`Chr2:30996138`	`C`	`CCA`	2bp_insertion	frameshift_variant	1	B24
`Chr2:30996138`	`C`	`CCA`	2bp_insertion	CDS_variant	1	B24
`Chr2:30996346`	`C`	`CA`	1bp_insertion	frameshift_variant	102	A1,A11,A13,A21,A22,A24,A25,A5,A7,A8,B10,B103,B105,B106,B107,B11,B110,B112,B114,B117,B12,B120,B126,B128,B130,B131,B132,B134,B14,B140,B16,B17,B19,B20,B21,B22,B24,B29,B3,B33,B35,B39,B40,B42,B45,B48,B5,B54,B55,B59,B60,B63,B65,B67,B69,B7,B71,B72,B83,B85,B86,B88,B89,B9,B97,C11,C13,C14,C16,C17,C18,C19,C2,C21,C27,C29,C30,C34,C35,C36,C42,C48,C5,C50,C51,C53,C57,C58,C60,C62,C64,C71,C73,C75,C8,C80,C81,C9,D10,D6,D8,D9
`Chr2:30996392`	`G`	`GA`	1bp_insertion	frameshift_variant	101	A1,A11,A13,A2,A21,A22,A7,A8,B100,B103,B105,B106,B107,B109,B11,B110,B114,B117,B12,B120,B123,B126,B128,B130,B131,B132,B134,B138,B140,B16,B17,B19,B20,B21,B22,B24,B29,B3,B33,B35,B40,B42,B45,B46,B48,B5,B54,B55,B59,B60,B61,B65,B69,B7,B71,B72,B77,B85,B86,B88,B89,B9,B94,B97,C11,C13,C14,C16,C17,C19,C2,C21,C24,C27,C29,C30,C33,C34,C37,C42,C5,C50,C51,C57,C58,C60,C64,C66,C67,C70,C71,C73,C78,C8,C80,C81,C9,D10,D6,D8,D9
`Chr2:30996395`	`C`	`CA`	1bp_insertion	frameshift_variant	97	A1,A13,A2,A21,A22,A7,A8,B100,B103,B105,B106,B107,B109,B11,B110,B114,B117,B12,B120,B123,B126,B128,B130,B131,B132,B134,B138,B140,B16,B17,B19,B20,B21,B22,B24,B29,B3,B33,B35,B40,B42,B45,B46,B48,B5,B54,B55,B59,B60,B61,B65,B69,B7,B72,B77,B85,B86,B88,B89,B9,B94,B97,C11,C13,C14,C16,C17,C19,C2,C24,C27,C29,C30,C34,C37,C42,C5,C50,C51,C57,C58,C60,C64,C66,C67,C70,C71,C73,C78,C8,C80,C81,C9,D10,D6,D8,D9
`Chr2:30996398`	`TCG`	`T`	2bp_deletion	frameshift_variant	98	A1,A13,A2,A21,A22,A7,A8,B100,B103,B105,B106,B107,B109,B11,B110,B114,B117,B12,B120,B123,B128,B130,B131,B132,B134,B138,B140,B16,B17,B19,B20,B21,B22,B24,B29,B3,B33,B35,B40,B42,B45,B46,B48,B5,B54,B55,B58,B59,B60,B61,B65,B69,B7,B71,B72,B77,B85,B86,B88,B89,B9,B94,B97,C11,C13,C14,C16,C17,C19,C2,C24,C27,C29,C30,C34,C37,C42,C5,C50,C51,C57,C58,C60,C63,C64,C66,C67,C70,C71,C73,C78,C8,C80,C81,C9,D6,D8,D9
`Chr2:30996445`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C20
`Chr2:30996469`	`G`	`GAC`	2bp_insertion	frameshift_variant	11	A7,B107,B19,B24,B5,B60,B84,B86,B97,C5,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791157.1

873 aa

436

873

DUF2921_N

DUF2921

PF25333 DUF2921_N 31-208 aa PF25333 DUF2921_N 266-402 aa PF25333 DUF2921_N 491-598 aa PF11145 DUF2921 616-860 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791157.1`	Pfam	`PF25333`	DUF2921_N	Domain	31	208	1.9e-53	182.6	DUF2921 lipocalin-like domain
`XP_057791157.1`	Pfam	`PF25333`	DUF2921_N	Domain	266	402	1.9e-53	182.6	DUF2921 lipocalin-like domain
`XP_057791157.1`	Pfam	`PF25333`	DUF2921_N	Domain	491	598	1.9e-53	182.6	DUF2921 lipocalin-like domain
`XP_057791157.1`	Pfam	`PF11145`	DUF2921	Repeat	616	860	2.8e-41	142.4	Transmembrane E3 ligase/DUF2921 transmembrane domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935174.1
ATGCCTTGTTCATGGATCTACATCTCCTTCCTTTCCACTTGTATCTGCACAGTTCATGCCTTTTCTTTCTCAAATTCCACAACTGTTTCCTACACAGATCATTGCTCTTCTGTAGTGCCTCAATCCATCCCAAATAACTGCACTTACAAAAACTTTATACCGCGTTTCATCACACCTCATTTCACCGGTGGAGAGAGCCTCATAGGCAGGAAAGCAGGGAACCAGCCCAATCAAAATCTTGCCAAATCTCTCTTACTTGA...

CDS

1 records

下载 CDS FASTA

LOC131008286
ATGCCTTGTTCATGGATCTACATCTCCTTCCTTTCCACTTGTATCTGCACAGTTCATGCCTTTTCTTTCTCAAATTCCACAACTGTTTCCTACACAGATCATTGCTCTTCTGTAGTGCCTCAATCCATCCCAAATAACTGCACTTACAAAAACTTTATACCGCGTTTCATCACACCTCATTTCACCGGTGGAGAGAGCCTCATAGGCAGGAAAGCAGGGAACCAGCCCAATCAAAATCTTGCCAAATCTCTCTTACTTGA...

Protein

1 records

下载 Protein FASTA

XP_057791157.1
MPCSWIYISFLSTCICTVHAFSFSNSTTVSYTDHCSSVVPQSIPNNCTYKNFIPRFITPHFTGGESLIGRKAGNQPNQNLAKSLLLEFQPKFNGTAENGIYKVEALLHIMYAFPFYHIPGYTGSYYETTRDQEAITFLLEGFWSQISGNLCMVGSAYLELEGGCCVNLDAVLKLNYAAEDNPSVYTSLISGTLHSTLFAGDLAYFDPILIYNFPVFPNYTYSLVPKELNSMFLNDYVFPKDRSLSLESSSFCSVVTAGQA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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