当前解析结果
SmilChr02G001857| 统一新 Gene ID | SmilChr02G001857 |
|---|---|
| 名称 | SmilChr02G001857 |
| 描述 | LRR receptor-like serine/threonine-protein kinase RGI2 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 33781624 - 33784431 / + |
| NCBI Gene ID | LOC131008335 |
|---|---|
| GeneID | 131008335 |
| locus_tag | - |
| NCBI Name | LOC131008335 |
| 原始查询 | LOC131008335 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor-like serine/threonine-protein kinase RGI2 |
| 产物 | LRR receptor-like serine/threonine-protein kinase RGI2 |
| Arabidopsis | AT5G48940 (AT5G48940)Leucine-rich repeat transmembrane protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834952] identity=62.4; qcov=0.662; evalue=5.02e-108; confidence=high |
| Rice | Os04g0132500 (CTB4a)- identity=57.2; qcov=0.652; evalue=6.43e-92; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008335 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.20000 | XP_057791201.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057791201.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057791201.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057791201.1 |
| 5 | Vacuole | 液泡 | 0.20000 | XP_057791201.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:33781670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B132,B5,B64,C4,C42 |
Chr2:33781673 |
TC |
T |
1bp_deletion | frameshift_variant | 16 | A16,A2,B11,B13,B14,B15,B29,B56,B91,B96,B97,C30,C52,C70,C84,D4 |
Chr2:33781722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C28,C37 |
Chr2:33781755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:33781771 |
C |
CCT |
2bp_insertion | frameshift_variant | 1 | C37 |
Chr2:33781771 |
C |
CCT |
2bp_insertion | CDS_variant | 1 | C37 |
Chr2:33781826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,C37 |
Chr2:33781836 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B20,C74 |
Chr2:33781848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B22,C25 |
Chr2:33781858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C74 |
Chr2:33781875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C74 |
Chr2:33781942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791201.1PF23598
LRR_14 111-259 aa
PF13855
LRR_8 123-182 aa
PF00560
LRR_1 147-169 aa
PF13855
LRR_8 147-206 aa
PF00560
LRR_1 171-191 aa
PF00560
LRR_1 196-215 aa
PF00560
LRR_1 243-261 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791201.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 111 | 259 | 4.2e-21 | 75.8 | Leucine-rich repeat region |
XP_057791201.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 123 | 182 | 3.1e-15 | 56.4 | Leucine rich repeat |
XP_057791201.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 1.3e-26 | 87.6 | Leucine Rich Repeat |
XP_057791201.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 147 | 206 | 3.1e-15 | 56.4 | Leucine rich repeat |
XP_057791201.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 191 | 1.3e-26 | 87.6 | Leucine Rich Repeat |
XP_057791201.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 196 | 215 | 1.3e-26 | 87.6 | Leucine Rich Repeat |
XP_057791201.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 243 | 261 | 1.3e-26 | 87.6 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。