当前解析结果
SmilChr02G001875| 统一新 Gene ID | SmilChr02G001875 |
|---|---|
| 名称 | SmilChr02G001875 |
| 描述 | uncharacterized protein At2g29880-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 34042124 - 34042848 / - |
| NCBI Gene ID | LOC131008342 |
|---|---|
| GeneID | 131008342 |
| locus_tag | - |
| NCBI Name | LOC131008342 |
| 原始查询 | LOC131008342 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784]; symbol=AT5G27260; hit=AT5G27260; species=arabidopsis; confidence=low |
| 产物 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784]; symbol=AT5G27260; hit=AT5G27260; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G27260 (AT5G27260)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784] identity=29.8; qcov=0.93; evalue=5.2e-15; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF24769 (At2g29880_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008342 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791209.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791209.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791209.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791209.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791209.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:34042139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:34042235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:34042321 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B81,C49 |
Chr2:34042321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B81,C49 |
Chr2:34042377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B140 |
Chr2:34042407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B71,B89,C62 |
Chr2:34042452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B89,C62 |
Chr2:34042455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:34042456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:34042472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr2:34042479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr2:34042513 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B96,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791209.1PF24769
At2g29880_C 165-209 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791209.1 |
Pfam | PF24769 |
At2g29880_C | Domain | 165 | 209 | 1.7e-22 | 80.3 | At2g29880 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。