当前解析结果
SmilChr02G001932| 统一新 Gene ID | SmilChr02G001932 |
|---|---|
| 名称 | SmilChr02G001932 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 34739313 - 34740095 / + |
| NCBI Gene ID | LOC131008364 |
|---|---|
| GeneID | 131008364 |
| locus_tag | - |
| NCBI Name | LOC131008364 |
| 原始查询 | LOC131008364 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=36.5; qcov=0.685; evalue=4.31e-30; confidence=medium |
| Rice | Os08g0125300- identity=40.9; qcov=0.988; evalue=4.16e-54; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008364 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791232.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057791232.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791232.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791232.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791232.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:34739318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B82,C53 |
Chr2:34739328 |
G |
GAA |
2bp_insertion | frameshift_variant | 1 | D3 |
Chr2:34739328 |
G |
GAA |
2bp_insertion | CDS_variant | 1 | D3 |
Chr2:34739333 |
T |
TGA |
2bp_insertion | frameshift_variant | 1 | D3 |
Chr2:34739333 |
T |
TGA |
2bp_insertion | CDS_variant | 1 | D3 |
Chr2:34739336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B111,B82,C21 |
Chr2:34739378 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | C34,C58 |
Chr2:34739378 |
TA |
T |
1bp_deletion | CDS_variant | 2 | C34,C58 |
Chr2:34739406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B82,B9,C21 |
Chr2:34739415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr2:34739430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B18,C38 |
Chr2:34739431 |
CAT |
C |
2bp_deletion | frameshift_variant | 2 | A3,C3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。