当前解析结果
SmilChr02G001957| 统一新 Gene ID | SmilChr02G001957 |
|---|---|
| 名称 | SmilChr02G001957 |
| 描述 | uncharacterized SmilChr02G001957 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 35305803 - 35308853 / - |
| NCBI Gene ID | LOC131008372 |
|---|---|
| GeneID | 131008372 |
| locus_tag | - |
| NCBI Name | LOC131008372 |
| 原始查询 | LOC131008372 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G09510 (AT3G09510)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108] identity=25.2; qcov=0.656; evalue=3.16e-29; confidence=low |
| Rice | Os06g0484800- identity=29; qcov=0.41; evalue=1.89e-27; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008372 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791239.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057791239.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057791239.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791239.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791239.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:35305868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B79,C56 |
Chr2:35305897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C48 |
Chr2:35305899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,D3 |
Chr2:35305921 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C8 |
Chr2:35305921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:35305957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B19,B67,C49 |
Chr2:35305975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:35306006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B89,C43 |
Chr2:35306086 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C8 |
Chr2:35306086 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C8 |
Chr2:35306170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C48 |
Chr2:35306242 |
C |
T |
EMS_canonical_SNV | stop_gained | 47 | A18,B10,B102,B107,B114,B119,B120,B121,B123,B129,B133,B134,B18,B26,B27,B32,B34,B35,B42,B43,B45,B48,B63,B67,B70,B75,B76,B83,B84,B88,B91,B93,C15,C16,C18,C21,C38,C50,C55,C57,C63,C64,C66,C70,C79,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791239.1PF00078
RVT_1 109-244 aa
PF13966
zf-RVT 436-504 aa
PF13456
RVT_3 624-726 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791239.1 |
Pfam | PF00078 |
RVT_1 | Domain | 109 | 244 | 5.9e-08 | 33.5 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057791239.1 |
Pfam | PF13966 |
zf-RVT | Domain | 436 | 504 | 1.8e-12 | 48.4 | zinc-binding in reverse transcriptase |
XP_057791239.1 |
Pfam | PF13456 |
RVT_3 | Domain | 624 | 726 | 4.8e-15 | 56.3 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。