当前解析结果
SmilChr02G002007| 统一新 Gene ID | SmilChr02G002007 |
|---|---|
| 名称 | SmilChr02G002007 |
| 描述 | uncharacterized SmilChr02G002007 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 36207981 - 36211427 / + |
| NCBI Gene ID | LOC131008383 |
|---|---|
| GeneID | 131008383 |
| locus_tag | - |
| NCBI Name | LOC131008383 |
| 原始查询 | LOC131008383 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=28.1; qcov=0.375; evalue=2.48e-45; confidence=low |
| Rice | Os06g0484800- identity=30.7; qcov=0.619; evalue=4.11e-93; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008383 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791250.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791250.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057791250.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791250.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791250.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:36208035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C11,C2,C67,C69 |
Chr2:36208092 |
AT |
A |
1bp_deletion | frameshift_variant | 38 | A1,A14,A20,A21,A24,A8,B106,B120,B128,B133,B136,B3,B50,B51,B65,B68,B79,B8,B85,B86,B95,C1,C12,C19,C2,C26,C28,C31,C37,C42,C44,C62,C76,C8,C82,C87,C9,D11 |
Chr2:36208126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B71,C3,C8 |
Chr2:36208137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,B69,B73 |
Chr2:36208166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr2:36208170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,B87 |
Chr2:36208194 |
C |
T |
EMS_canonical_SNV | stop_gained | 38 | A1,A13,A15,A19,A20,A21,A6,A7,B106,B108,B113,B136,B26,B29,B45,B58,B62,B71,B75,B77,B84,B96,C18,C2,C21,C25,C44,C54,C55,C59,C63,C70,C71,C72,C81,C84,D6,D9 |
Chr2:36208208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B102,D10 |
Chr2:36208263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr2:36208272 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B130,C33 |
Chr2:36208272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,C33 |
Chr2:36208309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B98,C41,C56,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791250.1PF00078
RVT_1 269-530 aa
PF13966
zf-RVT 788-866 aa
PF13456
RVT_3 996-1115 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791250.1 |
Pfam | PF00078 |
RVT_1 | Domain | 269 | 530 | 1.7e-30 | 107.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057791250.1 |
Pfam | PF13966 |
zf-RVT | Domain | 788 | 866 | 1.2e-17 | 65.0 | zinc-binding in reverse transcriptase |
XP_057791250.1 |
Pfam | PF13456 |
RVT_3 | Domain | 996 | 1115 | 9.6e-16 | 58.5 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。