Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002083`

染色体: Chr02 坐标: 37404704-37412300 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002083`
名称	SmilChr02G002083
描述	receptor-like serine/threonine-protein kinase SD1-7
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37404704 - 37412300 / `-`

ID 对照

NCBI Gene ID	`LOC131008407`
GeneID	`131008407`
locus_tag	`-`
NCBI Name	`LOC131008407`
原始查询	`LOC131008407`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like serine/threonine-protein kinase SD1-7
产物	receptor-like serine/threonine-protein kinase SD1-7
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=46.2; qcov=0.489; evalue=0; confidence=medium
Rice	`Os01g0784200` - identity=42.5; qcov=0.522; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131008407

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791272.1`
2	Nucleus	细胞核	0.00000	`XP_057791272.1`
3	Chromosome	染色体	0.00000	`XP_057791272.1`
4	Centromere	着丝粒	0.00000	`XP_057791272.1`
5	Chromatin	染色质	0.00000	`XP_057791272.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37405343`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C73
`Chr2:37405343`	`TA`	`T`	1bp_deletion	CDS_variant	1	C73
`Chr2:37405346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr2:37405575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B121,C80
`Chr2:37405661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr2:37405717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B32,B37,B6,C63
`Chr2:37406154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr2:37406219`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B84,C26,C77
`Chr2:37406346`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B127,B23
`Chr2:37406458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,D7
`Chr2:37406952`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,B101,B55
`Chr2:37406979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B101,B106,B55,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791272.1

1657 aa

828

1657

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 75-174 aa PF00954 S_locus_glycop 214-313 aa PF08276 PAN_2 334-399 aa PF00069 Pkinase 500-721 aa PF07714 PK_Tyr_Ser-Thr 500-732 aa PF01453 B_lectin 921-1020 aa PF00954 S_locus_glycop 1060-1158 aa PF08276 PAN_2 1180-1245 aa PF00069 Pkinase 1344-1558 aa PF07714 PK_Tyr_Ser-Thr 1346-1608 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791272.1`	Pfam	`PF01453`	B_lectin	Repeat	75	174	2.3e-59	199.0	D-mannose binding lectin
`XP_057791272.1`	Pfam	`PF00954`	S_locus_glycop	Domain	214	313	2.4e-38	131.8	S-locus glycoprotein domain
`XP_057791272.1`	Pfam	`PF08276`	PAN_2	Domain	334	399	1.5e-35	121.9	PAN-like domain
`XP_057791272.1`	Pfam	`PF00069`	Pkinase	Domain	500	721	1.1e-90	304.3	Protein kinase domain
`XP_057791272.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	500	732	2.6e-95	319.3	Protein tyrosine and serine/threonine kinase
`XP_057791272.1`	Pfam	`PF01453`	B_lectin	Repeat	921	1020	2.3e-59	199.0	D-mannose binding lectin
`XP_057791272.1`	Pfam	`PF00954`	S_locus_glycop	Domain	1060	1158	2.4e-38	131.8	S-locus glycoprotein domain
`XP_057791272.1`	Pfam	`PF08276`	PAN_2	Domain	1180	1245	1.5e-35	121.9	PAN-like domain
`XP_057791272.1`	Pfam	`PF00069`	Pkinase	Domain	1344	1558	1.1e-90	304.3	Protein kinase domain
`XP_057791272.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	1346	1608	2.6e-95	319.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935289.1
AAGGAGACGACTCTGCTGCCTGCGGGTCTCCTAAATAATTTAATGGAGTAAATCAAACTTTAGAATTGTTTGCATCTTCTTCTTCTCAGAATTTAAACATCACACTCTCTCTCTATCTCTCTCTCCCCCCCTCTCTCTAGATGAATAATCGACAGGCTATCCAAATCCTCTGCGCCGCTATCTATCTATCAACCAACTTGAAACTGAGTGTTGGAGCTGCTACACTTTCTGCAGGGCAATCTCTTGTAGATGATGGAGAG...

CDS

1 records

下载 CDS FASTA

LOC131008407
ATGAATAATCGACAGGCTATCCAAATCCTCTGCGCCGCTATCTATCTATCAACCAACTTGAAACTGAGTGTTGGAGCTGCTACACTTTCTGCAGGGCAATCTCTTGTAGATGATGGAGAGGTATTAATCTCTCCATCTCAGATATTCGAGCTCGGATTCTTCTCTCCGGGCTCATCCACAGCCAGATTTTTGGGCATATGGTACAAAGCTACACCGGACGTCGTCGTTTGGGTTGCAAACAGACAAAATCCTATAATTGG...

Protein

1 records

下载 Protein FASTA

XP_057791272.1
MNNRQAIQILCAAIYLSTNLKLSVGAATLSAGQSLVDDGEVLISPSQIFELGFFSPGSSTARFLGIWYKATPDVVVWVANRQNPIIGLNGALTLSKNGNLILTSAQGTTLWSSNSSTAASDPLLQLTVFGNLVIEENSKKLWQSFDNPSDTLLPGMKLLQETEAENVNVLTSWKSESDPAVGEFRFGIVNDGLSQIITMKGKERWYRAIFWDGHFPGYPDSVDVTWNSEIGSSGGKLISFFQPLNESVHTRLIMNSSGSF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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