当前解析结果
SmilChr02G002207| 统一新 Gene ID | SmilChr02G002207 |
|---|---|
| 名称 | SmilChr02G002207 |
| 描述 | protein FAR-RED IMPAIRED RESPONSE 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 39330199 - 39332799 / - |
| NCBI Gene ID | LOC131008433 |
|---|---|
| GeneID | 131008433 |
| locus_tag | - |
| NCBI Name | LOC131008433 |
| 原始查询 | LOC131008433 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR-RED IMPAIRED RESPONSE 1-like |
| 产物 | protein FAR-RED IMPAIRED RESPONSE 1-like |
| Arabidopsis | AT4G15090 (FAR1)FRS (FAR1 Related Sequences) transcription factor family [Source:NCBI gene (formerly Entrezgene);Acc:827173] identity=34.3; qcov=0.819; evalue=5.82e-84; confidence=low |
| Rice | Os11g0681300- identity=42.4; qcov=0.847; evalue=8.98e-122; confidence=medium |
| GO | GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03101 (FAR1); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008433 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791297.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057791297.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791297.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791297.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791297.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:39330221 |
T |
TCA |
2bp_insertion | frameshift_variant | 53 | A24,A5,A6,B1,B100,B108,B110,B111,B122,B125,B130,B137,B15,B17,B18,B21,B24,B3,B40,B43,B45,B48,B52,B53,B59,B62,B63,B64,B72,B73,B79,B82,B85,B95,B97,C18,C24,C25,C27,C29,C40,C53,C54,C57,C59,C60,C62,C64,C66,C7,C78,C84,D9 |
Chr2:39330226 |
TAA |
T |
2bp_deletion | frameshift_variant | 63 | A24,A5,A6,B1,B100,B108,B110,B111,B118,B119,B122,B125,B134,B137,B15,B17,B18,B21,B24,B25,B3,B40,B43,B45,B48,B52,B53,B57,B59,B61,B62,B63,B65,B72,B73,B79,B81,B82,B85,B95,B97,C18,C21,C24,C25,C27,C28,C29,C38,C39,C40,C53,C54,C57,C59,C60,C62,C64,C66,C7,C78,C84,D9 |
Chr2:39330232 |
CT |
C |
1bp_deletion | frameshift_variant | 25 | B1,B12,B123,B136,B138,B15,B30,B36,B47,B48,B49,B51,B56,B60,B64,B79,B90,B92,B96,C33,C37,C54,C65,C73,D4 |
Chr2:39330240 |
T |
TAA |
2bp_insertion | frameshift_variant | 6 | B137,B18,B40,C54,C60,C62 |
Chr2:39330394 |
AT |
A |
1bp_deletion | frameshift_variant | 10 | A4,B111,B42,B43,C10,C56,C65,D10,D3,D9 |
Chr2:39330406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B72,B78 |
Chr2:39330418 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | A13,B108,C12,C23,C57 |
Chr2:39330418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B108,C12,C23,C57 |
Chr2:39330443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C49 |
Chr2:39330455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B72,B78 |
Chr2:39330506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B19,B61,B70,B81,C49 |
Chr2:39330519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B15,B56,B64,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791297.1PF03101
FAR1 52-92 aa
PF00872
Transposase_mut 208-355 aa
PF10551
MULE 214-306 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791297.1 |
Pfam | PF03101 |
FAR1 | Domain | 52 | 92 | 9.3e-08 | 33.4 | FAR1 DNA-binding domain |
XP_057791297.1 |
Pfam | PF00872 |
Transposase_mut | Family | 208 | 355 | 2.4e-05 | 24.1 | Transposase, Mutator family |
XP_057791297.1 |
Pfam | PF10551 |
MULE | Domain | 214 | 306 | 8e-29 | 100.6 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。