当前解析结果
SmilChr02G002313| 统一新 Gene ID | SmilChr02G002313 |
|---|---|
| 名称 | SmilChr02G002313 |
| 描述 | uncharacterized SmilChr02G002313 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 40751121 - 40753160 / + |
| NCBI Gene ID | LOC131008458 |
|---|---|
| GeneID | 131008458 |
| locus_tag | - |
| NCBI Name | LOC131008458 |
| 原始查询 | LOC131008458 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G19260 (AT1G19260)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=50.7; qcov=0.973; evalue=0; confidence=high |
| Rice | Os02g0301400- identity=38.1; qcov=0.676; evalue=8.5e-101; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008458 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057791317.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057791317.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057791317.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791317.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791317.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:40751124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B16,B60,B89,C67,C69 |
Chr2:40751134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,B103,B49,C9 |
Chr2:40751135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,C1,C62 |
Chr2:40751210 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B115,B63 |
Chr2:40751210 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B115,B63 |
Chr2:40751217 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B21,B76,B83 |
Chr2:40751217 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B21,B76,B83 |
Chr2:40751244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C37,C63 |
Chr2:40751264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr2:40751276 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | A15,B110,B117,B135,B27,B36,B43,B45,B73,B83,C11,C45,D5 |
Chr2:40751290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B77,C23,C53 |
Chr2:40751323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,A9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791317.1PF14291
DUF4371 26-255 aa
PF27073
FAM200-ZBED5_RNase-like 171-260 aa
PF05699
Dimer_Tnp_hAT 596-655 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791317.1 |
Pfam | PF14291 |
DUF4371 | Domain | 26 | 255 | 1.1e-102 | 343.3 | ZMYM1/FAM200, RNase-like domain |
XP_057791317.1 |
Pfam | PF27073 |
FAM200-ZBED5_RNase-like | Domain | 171 | 260 | 1.5e-12 | 48.3 | FAM200/ZBED5 RNase-like |
XP_057791317.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 596 | 655 | 2.7e-06 | 27.8 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。