当前解析结果
SmilChr02G002394| 统一新 Gene ID | SmilChr02G002394 |
|---|---|
| 名称 | SmilChr02G002394 |
| 描述 | uncharacterized SmilChr02G002394 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 41843408 - 41844457 / + |
| NCBI Gene ID | LOC131008482 |
|---|---|
| GeneID | 131008482 |
| locus_tag | - |
| NCBI Name | LOC131008482 |
| 原始查询 | LOC131008482 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os12g0292200- identity=28.2; qcov=0.223; evalue=5.1e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008482 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791339.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791339.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057791339.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791339.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791339.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:41843410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:41843456 |
C |
T |
EMS_canonical_SNV | stop_gained | 41 | A4,A5,B105,B106,B111,B112,B124,B128,B24,B27,B38,B39,B40,B48,B55,B57,B62,B64,B73,B85,B87,B89,B99,C11,C13,C25,C31,C34,C48,C52,C67,C69,C72,C73,C78,C80,C83,C85,C86,C87,D5 |
Chr2:41843465 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | A20,B129,B137,B33,B56,B6,B74,B79,B96,C36,C46,C67,C7 |
Chr2:41843489 |
C |
T |
EMS_canonical_SNV | stop_gained | 144 | A11,A14,A16,A18,A19,A2,A20,A22,A25,A5,A6,A8,A9,B10,B100,B102,B103,B105,B107,B11,B110,B113,B114,B115,B117,B119,B12,B120,B121,B123,B126,B127,B130,B131,B133,B134,B135,B137,B140,B18,B19,B2,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B34,B36,B37,B38,B39,B4,B41,B44,B47,B48,B50,B52,B53,B54,B57,B58,B6,B60,B62,B64,B66,B67,B68,B69,B70,B71,B72,B75,B76,B77,B78,B8,B82,B84,B85,B86,B87,B88,B89,B9,B94,B97,B99,C1,C10,C13,C15,C16,C17,C18,C19,C21,C24,C27,C28,C3,C30,C32,C33,C35,C38,C39,C40,C41,C43,C44,C47,C50,C51,C52,C54,C55,C59,C63,C64,C66,C68,C70,C71,C75,C77,C79,C8,C80,C81,C84,C9,D2,D3,D5,D7 |
Chr2:41843533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:41843569 |
AT |
A |
1bp_deletion | frameshift_variant | 41 | A4,A5,B105,B106,B111,B112,B124,B128,B24,B27,B38,B39,B40,B48,B55,B57,B62,B64,B73,B85,B87,B89,B99,C11,C13,C25,C31,C34,C48,C52,C67,C69,C72,C73,C78,C80,C83,C85,C86,C87,D5 |
Chr2:41843572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:41843580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr2:41843630 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr2:41843651 |
C |
T |
EMS_canonical_SNV | stop_gained | 103 | A14,A18,A2,A20,A21,A22,A25,A5,A6,A8,A9,B10,B102,B103,B105,B107,B11,B110,B113,B114,B115,B119,B12,B120,B121,B123,B126,B127,B131,B133,B134,B140,B18,B19,B2,B22,B23,B27,B3,B31,B32,B34,B36,B4,B44,B48,B50,B52,B53,B57,B58,B6,B62,B67,B69,B70,B71,B72,B75,B77,B8,B82,B84,B85,B86,B87,B88,B89,B9,B94,B99,C1,C10,C15,C16,C17,C18,C19,C21,C24,C28,C3,C30,C32,C33,C35,C38,C39,C41,C43,C51,C63,C64,C66,C68,C71,C75,C77,C80,D11,D2,D5,D7 |
Chr2:41843664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr2:41843665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。