当前解析结果
SmilChr02G002406| 统一新 Gene ID | SmilChr02G002406 |
|---|---|
| 名称 | SmilChr02G002406 |
| 描述 | uncharacterized SmilChr02G002406 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 41973614 - 42011446 / + |
| NCBI Gene ID | LOC131008485 |
|---|---|
| GeneID | 131008485 |
| locus_tag | - |
| NCBI Name | LOC131008485 |
| 原始查询 | LOC131008485 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G19260 (AT1G19260)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=40; qcov=0.798; evalue=1.11e-147; confidence=medium |
| Rice | Os02g0301400- identity=32.1; qcov=0.553; evalue=2.11e-62; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF14291 (DUF4371) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008485 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791342.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057791342.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791342.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791342.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791342.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:41973621 |
A |
AT |
1bp_insertion | frameshift_variant | 28 | A11,A14,A7,A9,B103,B106,B115,B13,B135,B16,B2,B20,B28,B29,B48,B59,B66,B73,B89,C26,C45,C48,C50,C52,C54,C74,D1,D3 |
Chr2:41973739 |
TCC |
T |
2bp_deletion | frameshift_variant | 2 | C76,C84 |
Chr2:41973739 |
TCC |
T |
2bp_deletion | CDS_variant | 2 | C76,C84 |
Chr2:41973755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B66,C22 |
Chr2:41973861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B67,C1,C17 |
Chr2:41973901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr2:41973953 |
TG |
T |
1bp_deletion | frameshift_variant | 26 | A24,A8,B108,B113,B118,B125,B14,B18,B21,B41,B42,B43,B5,B52,B61,B76,C24,C33,C46,C51,C55,C57,C58,C70,C79,C8 |
Chr2:41973987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B63,B81,B83 |
Chr2:41974161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr2:41974245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr2:41974253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B32,B6,C63 |
Chr2:41974279 |
AG |
A |
1bp_deletion | frameshift_variant | 7 | A21,B15,B28,B7,C37,C39,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791342.1PF14291
DUF4371 129-247 aa
PF14291
DUF4371 249-329 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791342.1 |
Pfam | PF14291 |
DUF4371 | Domain | 129 | 247 | 5.7e-74 | 249.3 | ZMYM1/FAM200, RNase-like domain |
XP_057791342.1 |
Pfam | PF14291 |
DUF4371 | Domain | 249 | 329 | 5.7e-74 | 249.3 | ZMYM1/FAM200, RNase-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。