当前解析结果
SmilChr02G002407| 统一新 Gene ID | SmilChr02G002407 |
|---|---|
| 名称 | SmilChr02G002407 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 42025497 - 42026438 / + |
| NCBI Gene ID | LOC131008486 |
|---|---|
| GeneID | 131008486 |
| locus_tag | - |
| NCBI Name | LOC131008486 |
| 原始查询 | LOC131008486 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT5G20480 (EFR)EF-TU receptor [Source:NCBI gene (formerly Entrezgene);Acc:832170] identity=35.6; qcov=1.01; evalue=7.23e-53; confidence=medium |
| Rice | Os11g0559200 (Xa21*)- identity=44.7; qcov=0.786; evalue=5.53e-58; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008486 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057791343.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057791343.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791343.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791343.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791343.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:42025592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B36,B41,B51 |
Chr2:42025687 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B32,B6,C63 |
Chr2:42025687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B32,B6,C63 |
Chr2:42025708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr2:42025716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr2:42025717 |
GTA |
G |
2bp_deletion | frameshift_variant | 4 | B17,B58,B65,C87 |
Chr2:42025717 |
GTA |
G |
2bp_deletion | CDS_variant | 4 | B17,B58,B65,C87 |
Chr2:42025737 |
CT |
C |
1bp_deletion | frameshift_variant | 6 | B126,B44,B53,B71,B82,D5 |
Chr2:42025844 |
AG |
A |
1bp_deletion | frameshift_variant | 65 | A1,A2,A20,A22,A3,A6,A7,A8,B10,B103,B11,B110,B111,B114,B12,B121,B127,B131,B133,B138,B18,B19,B22,B23,B25,B36,B44,B48,B49,B5,B51,B52,B57,B60,B67,B72,B75,B8,B80,B84,B86,B88,B9,B94,C1,C10,C15,C16,C19,C28,C30,C32,C35,C41,C42,C51,C64,C66,C68,C75,C77,C80,D2,D3,D7 |
Chr2:42025915 |
C |
CAA |
2bp_insertion | frameshift_variant | 7 | A23,B109,B138,B50,B84,C18,C23 |
Chr2:42025919 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B33,B46,B80,C6 |
Chr2:42025919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,B46,B80,C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791343.1PF08263
LRRNT_2 30-69 aa
PF00560
LRR_1 100-121 aa
PF00560
LRR_1 123-144 aa
PF00560
LRR_1 147-169 aa
PF00560
LRR_1 171-193 aa
PF00560
LRR_1 196-217 aa
PF00560
LRR_1 269-290 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791343.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 30 | 69 | 4.4e-10 | 40.4 | Leucine rich repeat N-terminal domain |
XP_057791343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 121 | 2.9e-28 | 92.5 | Leucine Rich Repeat |
XP_057791343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 123 | 144 | 2.9e-28 | 92.5 | Leucine Rich Repeat |
XP_057791343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 2.9e-28 | 92.5 | Leucine Rich Repeat |
XP_057791343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 193 | 2.9e-28 | 92.5 | Leucine Rich Repeat |
XP_057791343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 196 | 217 | 2.9e-28 | 92.5 | Leucine Rich Repeat |
XP_057791343.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 269 | 290 | 2.9e-28 | 92.5 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。