当前解析结果
SmilChr02G002414| 统一新 Gene ID | SmilChr02G002414 |
|---|---|
| 名称 | SmilChr02G002414 |
| 描述 | uncharacterized SmilChr02G002414 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 42113950 - 42118038 / - |
| NCBI Gene ID | LOC131008488 |
|---|---|
| GeneID | 131008488 |
| locus_tag | - |
| NCBI Name | LOC131008488 |
| 原始查询 | LOC131008488 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=28.1; qcov=0.419; evalue=9.43e-60; confidence=low |
| Rice | Os06g0484800- identity=32.2; qcov=0.599; evalue=1.5e-132; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008488 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791345.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057791345.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057791345.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791345.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791345.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:42113989 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B94,C54 |
Chr2:42113989 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B94,C54 |
Chr2:42113991 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B94,C54 |
Chr2:42113991 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B94,C54 |
Chr2:42113992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B78,B87 |
Chr2:42113999 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,A20,B79,C68 |
Chr2:42114007 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A7,B22,B30,B48,B64,B86,C11,C21,C36 |
Chr2:42114008 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B94,C54 |
Chr2:42114008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C54 |
Chr2:42114030 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C54 |
Chr2:42114055 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B79,C4 |
Chr2:42114076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C57,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791345.1PF03372
Exo_endo_phos 4-223 aa
PF00078
RVT_1 493-745 aa
PF13966
zf-RVT 1015-1104 aa
PF13456
RVT_3 1213-1333 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791345.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 4 | 223 | 1.4e-16 | 61.6 | Endonuclease/Exonuclease/phosphatase family |
XP_057791345.1 |
Pfam | PF00078 |
RVT_1 | Domain | 493 | 745 | 7.1e-28 | 98.6 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057791345.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1015 | 1104 | 1.9e-17 | 64.4 | zinc-binding in reverse transcriptase |
XP_057791345.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1213 | 1333 | 5.3e-13 | 49.7 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。